New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4374498 =	NA (NA)	6 (0.020)	4/264	NT	NA	noncoding (1/99 nt)	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	4374528 =	NA (NA)					noncoding (31/99 nt)	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

GGATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4374653‑4374498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  >  NC_000913/4374528‑4374676                                                                                                                                                                                                                                                                                                                   GGATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCA                                                                                                                                                             <  2:663541/150‑1  GATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCAT                                                                                                                                                            >  1:3245389/1‑150  GATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCAT                                                                                                                                                            >  2:2445494/1‑150  GATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTCTACGCTGCAT                                                                                                                                                            >  1:3896199/1‑150   ATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATC                                                                                                                                                           >  2:3966246/1‑150    TCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCC                                                                                                                                                          >  2:4185804/1‑150    TCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCC                                                                                                                                                          >  2:3992296/1‑150    TCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCC                                                                                                                                                          >  1:2806948/1‑150    TCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCC                                                                                                                                                          <  2:2750104/150‑1     CTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG                                                                                                                                                         >  2:4522504/1‑150     CTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG                                                                                                                                                         >  1:2196760/1‑150     CTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG                                                                                                                                                         <  2:2581869/150‑1     CTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG                                                                                                                                                         >  1:4334879/1‑150      TCCAGCTACGCCAGCAGTAACTGATTAAACCGGGACGTTAAACATTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACCTCGTGCCTTGACATTGACTGGATGTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG                                                                                                                                                        <  2:1476740/150‑1      TCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG                                                                                                                                                        >  2:3653762/1‑150      TCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG                                                                                                                                                        <  2:1270999/150‑1      TCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG                                                                                                                                                        <  2:2208088/150‑1       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  1:942488/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  1:942859/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       <  2:503232/150‑1       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  2:268700/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  1:1081877/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  2:3921843/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  1:820679/1‑150       CCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC                                                                                                                                                       >  1:1583249/1‑150                                                                                     ACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCAGTCAATTTCAATGCCCGAGGTAGGCCTGATAAGCGTAGCGACTCAGGCAATTTTAAT                                                                         >  2:877563/1‑150                                                                                                                   AATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGC                                           >  2:5437967/1‑150                                                                                                                              GGCCGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTG                                >  1:365738/1‑150                                                                                                                              GGCCGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTG                                >  1:2347653/1‑150                                                                                                                               GCCGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGG                               >  2:4537224/1‑150                                                                                                                               GCCGGAAAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGG                               >  1:1052426/1‑150                                                                                                                                                     gATCCGGCCTACAGTTCATTGCAAATCCATTCACTTTCAATGCCCGATGGAGGCCTGATAAGCGTAGCGACTCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGG         <  1:3977765/149‑1                                                                                                                                                     CATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGG         <  1:4537224/150‑1                                                                                                                                                      ATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGG        >  2:1559751/1‑150                                                                                                                                                      ATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGG        <  1:3383991/150‑1                                                                                                                                                      ATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGG        <  2:5087900/150‑1                                                                                                                                                       TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGT       <  2:1465347/150‑1                                                                                                                                                         CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTC     <  1:1985180/150‑1                                                                                                                                                         CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTC     >  1:843286/1‑150                                                                                                                                                         CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTC     >  1:521640/1‑150                                                                                                                                                         CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTC     <  1:1985640/150‑1                                                                                                                                                          GGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCG    <  1:1726884/150‑1                                                                                                                                                           GCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGC   <  1:4794887/150‑1                                                                                                                                                           GCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGAGTTTTGCTGGGTTCGC   >  1:3509783/1‑150                                                                                                                                                            CCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  >  1:1284549/1‑150                                                                                                                                                            CCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  <  1:1145352/150‑1                                                                                                                                                            CCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  >  2:5151146/1‑150                                                                                                                                                            CCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  >  2:168855/1‑150                                                                                                                                                                                                                                                                                                                   GGATCTCCAGCTACGCCAGCAGTAACTGATTAAACAGGGAAGTTAAACATTAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4374653‑4374498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGCTGGAGATCCAGCGGCGTTTTGCTGGGTTCGCC  >  NC_000913/4374528‑4374676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.