New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4528081	345 (1.000)	7 (0.020)	5/278	NT	1.9%	intergenic (+15/+30)	ryjB/sgcQ	novel sRNA, function unknown/putative nucleoside triphosphatase
	?	NC_000913	= 4528108	370 (1.080)					intergenic (+42/+3)	ryjB/sgcQ	novel sRNA, function unknown/putative nucleoside triphosphatase
Rejected: Frequency below/above cutoff threshold.

GCCTGTACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4527952‑4528081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGA  <  NC_000913/4528108‑4528075                                                                                                                                                                      GCCTGTACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCAGAGCGCTT                <  1:2163128/150‑1 GCCTGTACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCAGAGCGCTT                <  1:2590361/150‑1 GCCTGTACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCAGAGCGCTT                <  1:2590467/150‑1      TACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCCGGGGATAAGCAGAGCGCTTATCCC           <  2:2318132/150‑1               AATATCTTTAATCATCCGTCTTTGACTCCATGCCGATTCGGTTTAATCTGTTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCTGGGTATAAGCAGAGCGCTTATCCCCGGCAAAGA  <  1:245888/150‑1                                                                                              AGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCTGGGGATAAGCAGAGCGCTTATCC            >  1:4341141/1‑61                                                                                              AGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGCTGGGGATAAGCAGAGCGCTTATCC            <  2:4341141/61‑1                                                                                                                                                                      GCCTGTACCCATTTAATATCGTTAATCATCCGTCGTTGACTCCATGCCGATTCGGGTTAATCTGGTAGCGATCCCCGTCGATACTTTTGACGAAGGCGGCAGGGATCGCAGAAGGGTTATTGCTCTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4527952‑4528081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGGGATAAGCAGAGCGCTTATCCCCGGCAAAGA  <  NC_000913/4528108‑4528075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.