| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 3 (0.010) | 3/262 | NT | 0.74% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 414 (1.250) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACaaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4633244‑4633091‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAAAC > NC_000913/4633169‑4633320 GCCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGC > 2:4028014/1‑150GCCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGC < 1:110187/150‑1GCCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGC > 2:4833643/1‑150 CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAATATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCC > 2:1014612/1‑150 CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCC > 2:1949759/1‑150 CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCC > 2:1520073/1‑150 CCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGAGGCGCCACGTCTTATCAGGCC > 1:2798718/1‑150 CGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCT > 1:917313/1‑150 GTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAGTTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTA > 2:2264189/1‑150 GTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTA > 2:3056779/1‑150 GTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTA < 2:5069143/150‑1 TGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTcc > 2:2977628/1‑148 TGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTAC > 2:2036386/1‑150 TGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTAC > 2:3000281/1‑150 GTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGCCTTATCAGGCCTACA < 1:5799084/150‑1 TATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAA > 1:3048658/1‑150 TATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCACCACGTCTTATCAGGCCTACAA < 1:2760647/150‑1 ATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAA < 1:5133131/150‑1 GGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCT > 2:3989974/1‑150 GTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTT > 2:4990257/1‑150 GGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCTGTCCTACAAATACCCGTAATTCCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAA > 2:3137898/1‑150 CCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGC < 1:4155270/150‑1 CCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGC < 1:1237626/150‑1 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 1:5248136/1‑150 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 1:5128050/1‑150 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 2:2319613/1‑150 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 2:1133797/1‑150 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 2:5406715/1‑150 CTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG > 2:3419811/1‑150 CTACAAAGACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCG < 1:1093404/150‑1 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG < 2:213961/150‑1 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG > 2:144808/1‑150 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG < 1:926352/150‑1 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG > 1:5302895/1‑150 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG > 1:3790996/1‑150 TACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG > 1:2520500/1‑150 TACAAAGACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGG < 2:4173338/150‑1 ACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGT < 2:1548971/150‑1 ACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGT < 2:1975354/150‑1 ACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGT > 1:3357495/1‑150 ACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGT > 1:189487/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA > 2:703573/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA > 2:4121688/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA > 2:67038/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA > 2:1455864/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA > 2:1455849/1‑150 CAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTA < 1:3704673/150‑1 AAATACCCGTAATTTCAGTATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAA > 2:2463645/1‑150 AAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAA > 2:1193624/1‑150 AAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAA < 1:400049/150‑1 AATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAAA < 1:4324237/150‑1 ATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACTCGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGAGGCTGGCGCGAGTGAGTTTCCCGGCGGTAAAC > 1:1067428/1‑150 GCCGTGTATTAAGCGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACCAAACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACaaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4633244‑4633091‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATACACGGCATTATGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGGCGCGAGTGAGTTTCCCGGCGGTAAAC > NC_000913/4633169‑4633320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |