New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	412077 =	103 (1.140)	5 (0.060)	4/260	NT	5.2%	coding (405/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family
	?	NC_000913	412119 =	87 (1.020)					coding (363/1185 nt)	araJ	L‑arabinose‑inducible putative transporter, MFS family

TTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/412229‑412077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCACCAGAAAC  >  NC_000913/412119‑412266                                                                                                                                                                                                                                                                                                                TTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTC                                                                                                                                                           >  1:691953/1‑149  TCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATAAAACCCGGTAATGTCACCGCCGCCGTGGCGGGGATGGTTTCC                                                                                                                                                          >  2:113858/1‑149   CACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCG                                                                                                                                                         <  1:490990/149‑1    cCGCTCTCTTCGTCTTACCTGCTGCTCGCCAGTGGTCGGCTGGGATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGG                                                                                                                                                        <  1:850519/148‑1    ACGCTCTCGTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGAATGGCGCATTTTTTGGCGTCGGAGCGATCGTGGTATCAAAAAATATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGG                                                                                                                                                        >  2:1478053/1‑149     CGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGG                                                                                                                                                       >  2:800537/1‑149                                                                                                    AAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGGTTTGAAAAAATTTGATAACAAGAACGCTCCGACGAC‑AAAAAATGCGCCATGCTGAAAGCCGGATACCAGCCGACCAAAGGCGAGCAGAAGGAAAG                                                       >  2:1186546/1‑149                                                                                                            CAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAG                                               >  1:491556/1‑149                                                                                                              AACCCGGAAAAGTCACCGCCGCCGTGGCGGGGAGGGTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCCTGCGGAACGCCGGCTTCCAGCCGCCCAATGGCGAGCCTCAGGTAAGCCGCAGCGAG                                             >  1:1421982/1‑149                                                                                                                 CCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGT                                          >  1:1222599/1‑149                                                                                                                 CCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGGTTTGATAATTATTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAACGCCGGATACCAGCCGCCCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGT                                          >  2:761633/1‑149                                                                                                                                                 ttcTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAAATCCGCCATGCGGAAAGCCGGATCCCAGCCGCCCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACACCGCC           >  2:460823/4‑149                                                                                                                                                         GTTTGATAAATTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCACCAGAAAC  <  1:1421141/149‑1                                                                                                                                                                                                                                                                                                                TTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGCATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTTCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/412229‑412077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCC‑AAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCACCAGAAAC  >  NC_000913/412119‑412266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.