BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542682 =	144 (1.590)	6 (0.070)	5/258	NT	4.6%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913	4542996 =	113 (1.340)	6 (0.070)	5/258	NT	4.6%	intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

CATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAA  >  NC_000913/4542535‑4542828

caacgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgcctgccaacactgcacagttttcccccaaaagatgaaacattt                                                                                                                                                   <  2:543838‑M1/2‑1 (MQ=255)

  tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGG                                                                                                                                                 <  1:1011161‑M1/149‑1 (MQ=255)

  acgattgccagagttttaattttcatgctgctttcctttcaaaaaactatttctaaatcgacctgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg                                                                                                                                                 >  2:138462‑M1/146‑149 (MQ=255)

   cgctttccagagttttaatgttgctgctgcattcctttcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgacgttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg                                                                                                                                                >  2:1226144‑M1/145‑149 (MQ=255)

    gattgccagagttttaattttcatgctgctttccttgcaaaaaactatttctaaatcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgacacatTTgggg                                                                                                                                               >  1:581426‑M1/144‑149 (MQ=255)

     tgtgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGtc                                                                                                                                              >  1:1529671‑M1/1‑147 (MQ=255)

         cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                          <  1:597289/149‑1 (MQ=255)

         cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                          <  1:471675/149‑1 (MQ=255)

         cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAAAAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                          >  2:146778/1‑149 (MQ=255)

         cGTTATACCGCCAGTAATGCTGCGCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATATAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTTAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                          <  2:406219/149‑1 (MQ=255)

         cGTTATACCGCCAGTAATGCTCCTCGTTTTGCCGGATTATGTGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGATAAGAGGTTTGATTTAACTTATAGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa                                                                                                                                          <  1:182564/149‑1 (MQ=255)

             ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                      <  1:1444895/149‑1 (MQ=255)

             ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                      <  1:1423285/149‑1 (MQ=255)

               aCCGCCAGTAATGCTGCTCGGTTTTCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATAGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                    <  2:495656/149‑1 (MQ=255)

                ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAATAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                   >  2:1110644/1‑149 (MQ=255)

                acGCCAGTAATGCTGCTCGTTTTGCCTGATTATGGTAAAGAAATAATCTCATAAAAGAAAAATTAAAAAGAGAATAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                   <  2:597417/148‑1 (MQ=255)

                       tAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata                                                                                                                            <  1:1130371/149‑1 (MQ=255)

                        aaTGCTGCTCGTGTTGCCGGATTATGGGAAAGAAATAATCTCATAAACTAAAAATAAAAAAGAGAAGAGGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATACTGTCCATATCataa                                                                                                                           <  2:853276/149‑1 (MQ=255)

                          tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATAataaaa                                                                                                                         >  2:1169907/1‑148 (MQ=255)

                            ctgctCG‑TTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                      >  1:1562174/1‑149 (MQ=255)

                             tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataat                                                                                                                      >  1:713459/1‑148 (MQ=255)

                               ctCGTTTTGCCGGATTATTGGAAAGAAATAATCTCATAAACGAAATATTAAAATGTGAAGTGGTTTGATTTAACTTATTGATAATAATGTTAAAAAAACAAATAAATTCAAGACAATTGGGGCCAAACTGTCCTTATCATAAATAAGtt                                                                                                                    <  2:1069516/149‑1 (MQ=255)

                               ctCGTTTTGCCGGATTATTGGAAACAAATAATCTCAAAAACGAAAAATTAAAAAGAGAATAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                    <  2:1529671/149‑1 (MQ=255)

                                   ttttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAATCTGTCCATATCTTAAAtaagttaagt                                                                                                                >  2:443711/1‑149 (MQ=255)

                                   ttttGCCGGAATATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt                                                                                                                <  2:149969/149‑1 (MQ=255)

                                     ttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt                                                                                                              <  1:1068493/149‑1 (MQ=255)

                                        ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAATGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAATATCATAAATAAGTTACGTAtttt                                                                                                           >  1:1465390/1‑149 (MQ=255)

                                               aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc                                                                                                    <  2:221380‑M1/149‑41 (MQ=255)

                                                tgtgaaagaaaTAATCTAATAAACGAAATATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTTGGGCCAAACTGACCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                   <  2:1022356/146‑1 (MQ=255)

                                                tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                   >  1:989637/1‑149 (MQ=255)

                                                tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                   <  2:215867/149‑1 (MQ=255)

                                                 gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAATAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc                                                                                                  <  1:1169907/149‑1 (MQ=255)

                                                  ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa                                                                                                 >  1:210843/1‑149 (MQ=255)

                                                   gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                >  1:590967/1‑149 (MQ=255)

                                                   gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAACAAATAAAATAAAACCAAATTGGGCCAAAAAGGCCATAACAAAAATTAGTTAAGTATTTTTTATCAAGGATa                                                                                               >  2:93521/1‑149 (MQ=255)

                                                      agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTACCTTATTGAGAATAAAGTTAAAAAAACAAATAAATACAAGCCAATTGGGGCCACACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                             >  2:875536/1‑149 (MQ=255)

                                                         aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                          >  1:415030/1‑149 (MQ=255)

                                                          ataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                         <  2:864228/149‑1 (MQ=255)

                                                          ataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCACACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                         >  2:1129987/1‑149 (MQ=255)

                                                           taatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat                                                                                        <  1:296461/149‑1 (MQ=255)

                                                            aatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt                                                                                       >  1:542149/1‑149 (MQ=255)

                                                             atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                      <  1:1208857/149‑1 (MQ=255)

                                                              tctcATACACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACATGACAATTTGGGCAAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa                                                                                     >  1:905835/1‑149 (MQ=255)

                                                              tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa                                                                                     <  1:822421/149‑1 (MQ=255)

                                                               ataaTAAACGAAAAATTTAAAACAGAAGAGGTTTGATTTAACTAATTGAAAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTACATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                    <  2:296226/146‑1 (MQ=255)

                                                                 cATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATATGTTACGTATTTTTTCTCAATCATAAAAATATTaaaat                                                                                  <  1:454763/149‑2 (MQ=255)

                                                                  aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc                                                                                                  <  2:204731/132‑1 (MQ=255)

                                                                  aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                 >  2:164146/1‑149 (MQ=255)

                                                                   ggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                >  2:1447369‑M1/81‑149 (MQ=255)

                                                                    gcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                               <  1:561544‑M1/70‑1 (MQ=255)

                                                                    aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                               >  1:1308326/1‑149 (MQ=255)

                                                                     aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAACCTGTCCATATCATAAATAAGGTACGTATTGTTTCTCCAGCATAAAAATATTAAAAAACGa                                                                              >  2:1180340/1‑149 (MQ=255)

                                                                     aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                              <  1:1247927/149‑1 (MQ=255)

                                                                      aCGAAAAATTAAAAAGAGTAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc                                                                             <  2:237109/149‑1 (MQ=255)

                                                                        gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa                                                                           >  1:1428691/1‑149 (MQ=255)

                                                                          aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAATGTCCATAACATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAGACaaaa                                                                         >  2:658908/1‑149 (MQ=255)

                                                                           aaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa                                                                        <  2:143979/149‑1 (MQ=255)

                                                                            aaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAAAATATATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATTAAAATATTAAAAAACGACAAAAAg                                                                       <  1:370860/149‑1 (MQ=255)

                                                                             aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc                                                                      >  2:680365/1‑149 (MQ=255)

                                                                             aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc                                                                      <  2:48897/149‑1 (MQ=255)

                                                                              ttAAAAAGATTAGAGGTTTTATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCa                                                                     <  1:1353367/149‑1 (MQ=255)

                                                                                aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                   <  2:210843/149‑1 (MQ=255)

                                                                                    agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATAGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAACAACGACAAAACGCATCGAAc                                                               >  2:907959/1‑149 (MQ=255)

                                                                                       gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGt                                                            >  1:676391/1‑149 (MQ=255)

                                                                                        aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                           >  1:1461402/1‑149 (MQ=255)

                                                                                        aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTATCAAGCATAAAAATATTAAAAAACGACAAAAAGAATCTAACTGtt                                                           >  1:139100/1‑149 (MQ=255)

                                                                                            tgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                       >  2:403076‑M1/56‑149 (MQ=255)

                                                                                            tgTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                       <  2:1309078/148‑1 (MQ=255)

                                                                                             gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAATTAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                      >  2:951795/1‑149 (MQ=255)

                                                                                              tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                     >  2:1297007/1‑149 (MQ=255)

                                                                                                  aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                 >  1:1120229/1‑149 (MQ=255)

                                                                                                  aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAACTAAATGTTTGATATTTaa                                                 >  1:500905/1‑149 (MQ=255)

                                                                                                   tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                <  2:565430/149‑1 (MQ=255)

                                                                                                    ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                               <  2:1562174/149‑1 (MQ=255)

                                                                                                        cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAATACGACAAAAAGCATCTAACTGTTTGATATGTAAattatt                                           >  2:931435/1‑149 (MQ=255)

                                                                                                        attATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattatt                                           <  2:982976/148‑1 (MQ=255)

                                                                                                         ttATTGATAATAAAGTTAAAAAAACAAAAAAATACAAGACAATGGGGGCCAAACTGTCCATATCATCAATAAGTTTCGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACACAAAGCATCTAACTGTTTGATATGTAAATTAttt                                          <  2:1047609/149‑1 (MQ=255)

                                                                                                           aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCt                                        >  2:781644/1‑149 (MQ=255)

                                                                                                              tataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                     <  2:1497380/148‑1 (MQ=255)

                                                                                                              gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                     >  2:429098/1‑149 (MQ=255)

                                                                                                               ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                    >  2:35455/1‑149 (MQ=255)

                                                                                                                taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGt                                   <  1:1248282/149‑1 (MQ=255)

                                                                                                                 aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACTACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTa                                  >  2:1252557/1‑149 (MQ=255)

                                                                                                                 aataaAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTa                                  <  1:1202365/149‑1 (MQ=255)

                                                                                                                        ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                           <  2:931903/149‑1 (MQ=255)

                                                                                                                        acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                           <  2:902055‑M1/122‑1 (MQ=255)

                                                                                                                        acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                           <  1:250079‑M1/122‑1 (MQ=255)

                                                                                                                          aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTATATTGTAAATTAAttt                         >  1:744553/1‑149 (MQ=255)

                                                                                                                            aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                       <  2:1361603/149‑1 (MQ=255)

                                                                                                                               aaaaaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTATCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAt                    <  1:400019/146‑1 (MQ=255)

                                                                                                                               aaCAAATAAATACAATACAATTGTGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAAAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTTAATTATTTCTATTGTAAATTAATTTCACAt                    <  1:1013782/149‑1 (MQ=255)

                                                                                                                                  aaaaaaatACAAGACAATTGGGCCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                 <  1:1570595/149‑1 (MQ=255)

                                                                                                                                          aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta         >  1:136321/1‑149 (MQ=255)

                                                                                                                                           cAACACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtat        <  2:1288578/149‑1 (MQ=255)

                                                                                                                                            aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATATAAATGTTTGATATGTAAATTATTTCTATATTATATTAATTTCACCTCACCTACGCtata       >  2:144894/1‑149 (MQ=255)

                                                                                                                                             aGACAATTGGGGCCAACCTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATCTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCTCTatat      >  1:1244243/1‑149 (MQ=255)

                                                                                                                                             aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCTTAAAAATATTAAAAAACGACAAAAAGCATCTAACTTTTTTATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCTCTatat      >  2:1065930/1‑149 (MQ=255)

                                                                                                                                              gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATg     >  1:435931/1‑149 (MQ=255)

                                                                                                                                               aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGt    <  1:781644/149‑1 (MQ=255)

                                                                                                                                                cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTa   <  2:339404/149‑1 (MQ=255)

CATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAA  >  NC_000913/4542535‑4542828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.