New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2440343 =NA (NA)3 (0.030) 3/264 NT NA noncoding (1/36 nt) REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2440375 = NA (NA)noncoding (33/36 nt) REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 125 total aligned reads displayed.

AAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGCTCTTCA  >  NC_000913/2440229‑2440523
                                                                                                                                                  |                                                                                                                                                    
aaaTCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTa                                                                                                                                                    >  2:929746/1‑149 (MQ=255)
aaaTCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTa                                                                                                                                                    >  1:54321/1‑149 (MQ=255)
    gaccgaaacgaccgctcgcgaactgaccaccggtatgtctcacagcttcggcttcggcggcaccaccgccacgctggtaatgcgcaagctgaaagattaattcgcaggagGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGc                                                                                                                                                >  1:263210‑M1/111‑149 (MQ=255)
        aaaGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAAt                                                                                                                                            >  2:1135797/1‑149 (MQ=255)
        aaaGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAAt                                                                                                                                            >  2:475199/1‑149 (MQ=255)
         aaGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGGGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAAtt                                                                                                                                           <  1:1252827/149‑1 (MQ=255)
          aGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTa                                                                                                                                          >  2:434732/1‑149 (MQ=255)
          aGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGCTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTa                                                                                                                                          <  2:432188/149‑1 (MQ=255)
             gggAAGTTTGCCTGGAACTGGCGGCGATTGTCAATTATGTGAAAAAGGGAACCATCTGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATc                                                                                                                                       <  1:1464325/149‑1 (MQ=255)
              ggAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCt                                                                                                                                      <  1:894857/149‑1 (MQ=255)
                aaGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt                                                                                                                                    <  2:1487426/149‑1 (MQ=255)
                 aGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTc                                                                                                                                   >  1:568403/1‑149 (MQ=255)
                 aGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTc                                                                                                                                   >  1:1164426/1‑149 (MQ=255)
                      gCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCtt                                                                                                                              >  1:78756/1‑149 (MQ=255)
                        cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTgc                                                                                                                            <  1:1223634/149‑1 (MQ=255)
                        cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTgc                                                                                                                            <  1:984828/149‑1 (MQ=255)
                         tGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCGGGCGCGTCTACACCGACCTACTGCGAATTAATCTTTCAGCTTgcg                                                                                                                           >  1:1078398/1‑149 (MQ=255)
                          ggAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTgcgc                                                                                                                          >  2:656162/1‑149 (MQ=255)
                           gAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCGACTCCGCCCTACTGCGAATTAATCTTTCAGCTTGCGCa                                                                                                                         >  1:1466707/1‑149 (MQ=255)
                             aCTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCAtt                                                                                                                       <  2:1540636/149‑1 (MQ=255)
                              cTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTa                                                                                                                      >  2:1097942/1‑149 (MQ=255)
                               tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTACGACCTACTGCGAATTTATCTTTCAGCTTGCGCATTAc                                                                                                                     >  2:396356/1‑149 (MQ=255)
                                 gcggcgATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCa                                                                                                                   <  1:827150/149‑1 (MQ=255)
                                  cggcgATTGTCAATGATGTGACAAACGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGGAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGGGCATTACCAg                                                                                                                  <  2:702685/149‑1 (MQ=255)
                                    gcgATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCg                                                                                                                <  2:547129/149‑1 (MQ=255)
                                      gATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGTCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTg                                                                                                              <  1:867515/149‑1 (MQ=255)
                                           tCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGtt                                                                                                         >  1:1345692/1‑149 (MQ=255)
                                            cAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTg                                                                                                        <  2:572370/149‑1 (MQ=255)
                                            cAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTg                                                                                                        >  1:283918/1‑149 (MQ=255)
                                            cAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTg                                                                                                        <  2:743009/149‑1 (MQ=255)
                                            cAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTg                                                                                                        <  1:1097942/149‑1 (MQ=255)
                                             aaTTATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGCAGGCCGCATTGGCGCGAAAAGTCGGATGAGACCATGGCGCGTCTACTCCAACATACTGCGAATTAAGATTACCGCTTGCGCATTACCAGCGTGGCGTTgg                                                                                                       >  2:87033/1‑149 (MQ=255)
                                               tgatgTGAAAAAGGGAACCATCAGGGGCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCTCGTCTACTCCGACCTACTGCGTATGAATCTTTCAGCTGGCGCAGTACCAGCGTGGCGTTGGTg                                                                                                     >  1:410129/1‑149 (MQ=255)
                                                gatgTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTgc                                                                                                    <  1:673409/149‑1 (MQ=255)
                                                   gtgAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTgccgc                                                                                                 >  2:1492338/1‑149 (MQ=255)
                                                      aaaaaGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCgccga                                                                                              >  1:1447150/1‑149 (MQ=255)
                                                      aaaaaGGGAACCATCAGGTTCCCTTTTGCGTTAGAGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGCCCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCgccga                                                                                              >  1:359568/1‑149 (MQ=255)
                                                       aaaaGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACAGACTGCGAATTAATCTTTCAGCTTGCGCATTTGCAGCGTGGCGTTGGTGCCgccgag                                                                                             >  2:271033/1‑148 (MQ=255)
                                                            ggAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACAAGCGTGGCGTTGGTGCCgccgaagcaga                                                                                        >  1:349250/1‑149 (MQ=255)
                                                             gAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCgccgaagccgaa                                                                                       <  2:1121126/149‑1 (MQ=255)
                                                              aaCCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGccgaagctgaag                                                                                      <  1:1293451/149‑1 (MQ=255)
                                                               aCCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGCCCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCcgaagccgaagc                                                                                     >  1:784835/1‑149 (MQ=255)
                                                               aCCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCcgaagccgaagc                                                                                     <  2:78756/149‑1 (MQ=255)
                                                                 cATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTTCCGCCGAAGCCGAAGCtt                                                                                   >  1:1062457/1‑148 (MQ=255)
                                                                 cATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTg                                                                                   >  1:1288357/1‑149 (MQ=255)
                                                                       gTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGAc                                                                             >  1:1188998/1‑149 (MQ=255)
                                                                       gTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGAc                                                                             <  1:338701/149‑1 (MQ=255)
                                                                              tggtaatgcgcaagctgaaagattaattcgcagtaggtcggagtagacgcgccagcgtcgcatccgacCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACgg                                                                      >  2:120543‑M2/69‑149 (MQ=255)
                                                                                tGCGTTAGTGCCGGATGACGCATTGGCGCGTAACGTCGGATGCGACGCTGGCTCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTTGTGCCGCCGAAGCCGAAGCTGTTAGACATAACggtg                                                                    <  2:842576/149‑1 (MQ=255)
                                                                                tGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAATCCGAAGCTGTTAGACATAACggtg                                                                    <  1:1156583/149‑1 (MQ=255)
                                                                                tGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACggtg                                                                    <  2:663563/149‑1 (MQ=255)
                                                                                   gTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGCCGCTGTTAGAAATACCGGTGGTc                                                                 >  2:197987/1‑149 (MQ=255)
                                                                                   gTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGCCATAACGGTGGTc                                                                 >  2:1218376/1‑149 (MQ=255)
                                                                                   gTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTc                                                                 >  2:2374/1‑149 (MQ=255)
                                                                                    ttAGTGCCGGATGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCa                                                                <  2:1466028/149‑1 (MQ=255)
                                                                                    ttAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCa                                                                <  1:62970/149‑1 (MQ=255)
                                                                                      aGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGt                                                              <  2:677556/149‑1 (MQ=255)
                                                                                        tGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTc                                                            >  1:843310/1‑149 (MQ=255)
                                                                                        tGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTc                                                            >  2:1412941/1‑149 (MQ=255)
                                                                                         gCCGGAGGCCGCATAGGCGCGGAACGTCGGCTGCGACGCTTGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTCCCACCGTGGCGTTGGTGCCGCCGAAGCCGACGCTGTTAGACATAACGGTGGTCAGTTcg                                                           <  2:161404/149‑1 (MQ=255)
                                                                                           cGGAGGCCGCAGTGGCGCGTAACGTCGGATGCGACGCTGGAGCGTCTACTCCGACCTACTGCGAATTATTCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTcgcg                                                         <  1:171210/149‑1 (MQ=255)
                                                                                             gAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGAt                                                       <  2:295072/149‑1 (MQ=255)
                                                                                             gAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGAt                                                       <  1:1412941/149‑1 (MQ=255)
                                                                                             gAGGCCGCATTGGCGCGTAACGGCGGAGGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGAt                                                       <  1:886080/149‑1 (MQ=255)
                                                                                                gCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTTCTGCGAATTAATCTTTCAGCTTGCGCATTACGAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCgg                                                    >  1:559316/1‑149 (MQ=255)
                                                                                                      ttGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGAGCTACTGCGAATTAATCTTTCCGCTTGCGCATGACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACAAAACGGTGGTCAGTTCGCGATCGGTCGttt                                              <  1:475199/149‑1 (MQ=255)
                                                                                                        ggCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCg                                            <  2:955685/149‑1 (MQ=255)
                                                                                                           gcgTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGCCCTACTGCGAATTAATGTTTCCGCTTGCGCCTTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGACGCTGTTAGACATAACGGTGGGCAGTTCGCGTTCGGGCGTTTCGGTc                                         >  1:141741/1‑149 (MQ=255)
                                                                                                           gcgTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGCCATAGCGGTGGTCAGTTCGCGATCGGTCGTTTCGGtg                                         >  1:927677/1‑148 (MQ=255)
                                                                                                           gcagtaggtcggagtagacgcgccagcgtcgcatccgacCTCCTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGGTGGTGCCGCCGAAGCCGAAGCTGTGAGACATACCGGTGGTCAGTTCGCGAGCGGTCGTTTCGGTc                                         >  1:263210‑M2/40‑149 (MQ=255)
                                                                                                             gTAACGTCGGATTCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCAc                                       <  2:1428287/149‑1 (MQ=255)
                                                                                                             gTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCAc                                       <  1:1290877/149‑1 (MQ=255)
                                                                                                             agtaggtcggagtagacgcgccagcgtcgcatccgacCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCAc                                       <  1:120543‑M2/112‑1 (MQ=255)
                                                                                                                 cGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTTGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGGGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATg                                   >  2:1378740/1‑149 (MQ=255)
                                                                                                                 cGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGACGCCGAAGCTGTTAGACATTACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATg                                   >  1:215031/1‑149 (MQ=255)
                                                                                                                    CGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTc                                >  2:1226020‑M1/1‑149 (MQ=255)
                                                                                                                    CGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTc                                >  1:650970‑M1/1‑149 (MQ=255)
                                                                                                                    CGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTc                                >  2:366227‑M1/1‑149 (MQ=255)
                                                                                                                    CGGATGCGACGCTGGCGCGGCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTc                                >  2:700577‑M1/1‑149 (MQ=255)
                                                                                                                     GGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCa                               >  1:434732‑M1/1‑149 (MQ=255)
                                                                                                                       ttGCGACGCTGGCGCGTCTAATCCGACCTACTGCTAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGAGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCTGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGa                             <  1:128573/148‑1 (MQ=255)
                                                                                                                       ATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGa                             >  1:539799‑M1/1‑149 (MQ=255)
                                                                                                                           gACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCg                         >  1:394683/1‑149 (MQ=255)
                                                                                                                            aCGCTGGCGCGTCTACTCCGCCCTACTGCGAATTAATCTTTCAGCTTGCGCATTTCCAGCGTGGCGTTGGTGCCGCCGATGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGc                        >  2:1253244/1‑149 (MQ=255)
                                                                                                                               cTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGc                     <  1:1257801/149‑1 (MQ=255)
                                                                                                                                  gcgcGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTg                  <  2:677647/149‑1 (MQ=255)
                                                                                                                                   cgcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGc                 <  2:609175/149‑1 (MQ=255)
                                                                                                                                   cgcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGc                 <  1:1492338/149‑1 (MQ=255)
                                                                                                                                    gcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCt                >  2:1402206/1‑149 (MQ=255)
                                                                                                                                    gcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTACt                <  2:1188998/149‑1 (MQ=255)
                                                                                                                                     cgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTc               <  1:1135797/149‑1 (MQ=255)
                                                                                                                                     cgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTc               <  2:1479857/149‑1 (MQ=255)
                                                                                                                                      gTCTACTCCGACCTACTGCGAATTACTCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCg              >  2:303893/1‑149 (MQ=255)
                                                                                                                                      gTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCg              >  1:560254/1‑149 (MQ=255)
                                                                                                                                        cTACCCCGCCCGACCGCGAAATCAGCTTACAGCTTGCGCATTACCAGCGTGGCGTAGGCGCCGCCGAAGCCGAAGCTGTTATACATTACGGTGGTCAGTGCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTc            <  2:1008251/149‑1 (MQ=255)
                                                                                                                                           cTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTGAGCCATAACGGGGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCac         >  1:871457/1‑148 (MQ=255)
                                                                                                                                           cTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGGGCCGCCGAAGCCGAAGCTGTTAGACATAACGGGGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAg         <  1:393763/149‑1 (MQ=255)
                                                                                                                                                acCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGTTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGCTCtt    >  2:544252‑M2/3‑149 (MQ=255)
                                                                                                                                                acCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCa                                        <  1:982363‑M2/111‑1 (MQ=255)
                                                                                                                                                  cTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTCGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGCTCGGTCGTTTCGGTCACGATGTTCAGCCCCGCCGCCTGCTCGTCCAGCTCTTCa  >  1:1105033/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
AAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGCTCTTCA  >  NC_000913/2440229‑2440523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.