| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,390,512 | A→G | 5.2% | intergenic (+63/+71) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,390,512 | 0 | A | G | 5.2% | 299.4 / 6.9 | 117 | intergenic (+63/+71) | aaeR/tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| Reads supporting (aligned to +/- strand): ref base A (58/50); new base G (2/4); total (62/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-02 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGCCCTTC > NC_000913/3390366‑3390660 | gTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCAAATTGTACTGTTACGTTGTAAAAACCTGTGCCAACGGGTTCCCCTCCCCCTAACCCTCAcc > 2:1518970/1‑149 (MQ=255) tGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCCCGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCCCCCCaa > 1:821679/1‑149 (MQ=255) tGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCaa > 2:1369270/1‑149 (MQ=255) tGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCACGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCaa < 1:1100940/149‑1 (MQ=255) aTCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAg < 2:242860/149‑1 (MQ=255) aaCTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAgggg > 1:1481118/1‑149 (MQ=255) aCTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGc > 1:44411/1‑149 (MQ=255) cGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAg < 1:106533/149‑1 (MQ=255) cGCTGACGGATTATTTTGTTGAGGGCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAg < 1:529848/149‑1 (MQ=255) gCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCGCCCCTTTGGGGTGAgg < 2:1221733/149‑1 (MQ=255) gCTGACGGATTATTTTGTTGAGCTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAgg < 1:258076/149‑1 (MQ=255) cTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAggg > 1:995100/1‑149 (MQ=255) ttactgATTATTTTGTTGAGGTCTGTAAATTGTTTCAGGAGAGGCACGGGCGCGGGAAAGAGATGTAATTCATATTGTACTGTTACGTTGTACATACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAgggg < 1:1485985/144‑1 (MQ=39) tGACGGAGTATTTTGTTGAGGACGGCAAATTGTTTCAGGAGATGCCCGGGCGCGGGAAAGAGAAGTAATGCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCGCCCCTTTGGGGTGAgggt < 1:391190/149‑2 (MQ=255) cGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGAcc > 2:896673/1‑149 (MQ=255) cGGATCATTTTGTTGAGGTCGGTAAATTGTATCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCGCCCCTTTGGGGTGAgggttag < 2:622457/149‑5 (MQ=255) ggATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCg > 2:650301/1‑149 (MQ=255) ttttGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTg > 2:1176177/1‑149 (MQ=255) gttgAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACg > 1:341473/1‑149 (MQ=255) aGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGa > 2:37483/1‑149 (MQ=255) aGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACAGTTCGTGCACGTAGa > 1:94016/1‑149 (MQ=255) gTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGatt < 2:1545618/149‑1 (MQ=255) tAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGCCCGTTCGTGCACGGAGAAAGatta > 2:315229/1‑149 (MQ=255) tAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGagta > 1:1452346/1‑149 (MQ=255) aaaTTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGattaa > 1:175838/1‑149 (MQ=255) ttGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCCACGGGTTCCCCTCACCCTAACCCTCACGCCAACGGGGCGAGGGGACCGTTCGTGCCCGTAGAAAGattaatta > 1:887320/1‑149 (MQ=255) tctatccggAGCTGCACGCGCGCGGGAACGCGAATGACTTCATATTGTACTGTTACGTTGTACAACCCTGTGCCAAGGGGGTCCCCGCACCCTAACCCACACCCCTAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTAt < 2:1446595/142‑1 (MQ=255) gtctCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAATCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATc < 1:1233361/146‑1 (MQ=255) gTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATc < 1:650301/149‑1 (MQ=255) ttCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCt > 1:1233044/1‑149 (MQ=255) tCAGGACATGCACGGGCGCGGGAAAGACAAGTAATTCATATTGTACGGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCACAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCtt < 1:1066578/149‑1 (MQ=255) cAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTc < 2:669712/149‑1 (MQ=255) aGGAGATTCACGGGCGCGGGATAGAGAAGTAATTCATATTGTACTGTTACGTTGTAGAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACGCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCt < 1:289353/149‑1 (MQ=255) gaTGCACGGGCGCGGGAACGAGAAGTAATTCATATTGTACTGTTTCGTTGTACAAACCTGTGCCAACGGGTGCCCCTCACCCTAACCCTCACCCCAACGGGGCGAGGGGACCGTTCGTGCACGTAGAAGGA‑TAATAATCTTTCtacgtg < 2:1112739/149‑6 (MQ=255) gCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATa > 1:1306334/1‑149 (MQ=255) gCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATa < 1:1033424/149‑1 (MQ=255) cACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAg > 1:350083/1‑149 (MQ=255) cACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCATCACCCTAACCCTCACCCCAAAGGGGAGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAg > 2:1425780/1‑149 (MQ=255) aCGGGCGCGGGAAAGAGAAGTAATTCATCTTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGt < 1:1197851/149‑1 (MQ=255) aCGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGt > 1:455842/1‑149 (MQ=255) aCGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGt > 1:115644/1‑149 (MQ=255) ggCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACCTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGAGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGaa < 1:356081/149‑1 (MQ=255) gcgcGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGaaa < 2:145454/149‑1 (MQ=255) cgGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAatta > 2:695337/1‑149 (MQ=255) ggAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAGTTATCGTTCTGATAATAGTGAAattatt > 2:1127655/1‑149 (MQ=255) gAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCCCCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAAttatta > 2:1547592/1‑149 (MQ=255) aaaGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCACACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATAAATTATCCTTCTGAAAATAGTGAAATTATTAc < 2:1189683/149‑1 (MQ=255) gagaAGTAATTCATACTGTACTGGTACGTTGTACACACCTGTGCCAACGGGATCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGGGCACGTAGAAAGATTAATTCTCCTTCTGAAAATAGTGAAATTCTTACGCa < 1:1423674/149‑1 (MQ=38) agaAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGGGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAg > 1:132134/1‑149 (MQ=255) tCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCaa > 1:768220/1‑149 (MQ=255) tCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCaa < 1:973573/149‑1 (MQ=255) tCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCACCTCACACTACCCCTCACCCCAAAGGGTCGAGGGGACCGTTCGTGATCGTAGAAATATTAATTATACTTATGAAAATAGTGAAAGTATTTCGCATTACCgagca > 1:1013732/1‑145 (MQ=255) atatTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACa < 1:360912/149‑1 (MQ=255) ttACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAg < 2:1145722/148‑1 (MQ=255) tACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAgg > 2:285381/1‑149 (MQ=255) tACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAgg < 1:970723/149‑1 (MQ=255) ttACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATc < 1:896673/149‑1 (MQ=255) ttACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCGGAAAATAGTGAAATTATTAAGCAGTACCGCCAACAGTCAGGTTATc > 2:705488/1‑149 (MQ=255) ttACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGATCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATc > 2:52526/1‑149 (MQ=255) tACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCg < 1:157505/149‑1 (MQ=255) aCGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGa < 1:1176177/149‑1 (MQ=255) cGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTTCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGAc < 1:873513/149‑1 (MQ=255) cGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGAc > 2:944769/1‑149 (MQ=255) gTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACt > 1:1529794/1‑149 (MQ=255) ttGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCTCGGAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCTACAGTCAGGTTATCGACtt > 1:1276044/1‑149 (MQ=255) ttGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGCCtt > 1:1054068/1‑149 (MQ=255) ttGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACtt > 2:823441/1‑149 (MQ=255) gTACAAACCTGTGCCAACGGGTTCCCCTCACCCTACCCCTCACCCCAAAGGGGCGAGGGGACCGGTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATATGGAAAGTATTACTCAGTACCGCCAACAGTCAGGTTATCGACTTTc > 2:1062631/1‑149 (MQ=39) tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGCCCGTTCGTGCACGTAGAAAGAGTAATTATCCTTCTGAAAATTGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCa > 2:549244/1‑149 (MQ=255) tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCa > 1:9010/1‑149 (MQ=255) aCAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCaa > 2:1480134/1‑149 (MQ=255) aCCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGtt < 1:1004931/149‑1 (MQ=255) ccTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtg > 1:1405431/1‑149 (MQ=255) ccTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCATTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtg > 1:660331/1‑149 (MQ=255) cTGTGCCAACGGGTTCCCCTCACCCTAACCCTAACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtgg < 2:94016/149‑1 (MQ=255) gCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtggc‑tgg < 2:1237011/149‑1 (MQ=255) ccACCGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCACCAGTCAGGTTATCGACGTTCAACGTttgc‑tggc > 2:94706/1‑149 (MQ=255) ccAACGGGTTCCCCTCACCCTACCCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtggc‑tggc < 1:61680/149‑1 (MQ=255) ccAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCTTGCACGTAGAAAGATTAATTATACTTCTGAAAATAGTGAAATTATTACGCAGTAGCGCCAACAGTCAGGTTATCGACTTTCAACGTtggc‑tggc < 1:339320/149‑1 (MQ=255) ccAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtggc‑tggc < 2:150178/149‑1 (MQ=255) ccAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGCGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtggc‑tggc < 2:1471362/149‑1 (MQ=255) cAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGcc > 1:837474/1‑149 (MQ=255) ccccTCACCCTCACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAAc < 2:1124638/149‑1 (MQ=255) ccTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAATATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCGTGGGCCA‑GCCAAcgt < 2:341473/149‑3 (MQ=38) ccTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAAGTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGCCTTTCAACGTTGGA‑TGGCCCACGCCCACCg > 2:1014064/1‑149 (MQ=255) cTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCgg > 1:1263756/1‑149 (MQ=255) aCCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGCAAGATTAATTTTCCTTCTGAAAATAGTGAAAGTATTACGCAGTACCGCCAACAGTCAGGTTATCGCATTTAAAACTTTTC‑TGGGCCACGCGACCGGGCaa > 2:1463284/1‑149 (MQ=37) aCCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCACCCGCCaa > 2:957913/1‑149 (MQ=255) ccTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCAAGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAAc > 2:966670/1‑149 (MQ=255) ggtccccTCGCCCCTTTGGGGTGAGGGTACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACt > 1:365511/5‑149 (MQ=255) aaCCCTCACCCCACAGGGGCGAGGGGACCGTGCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGGGAAATTATTACGCAGTACCGCCAACAGTCAGGTAATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACttt < 1:39773/149‑1 (MQ=255) ccccTCGCCCCTTTGGGGTGAGGGGACCGTTGGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGTAATTATTAGGCAGTACCGCCAACAGTCAGGATAGCGCGTTTCAACGTTGGC‑TGGCCCACGCCCACCGGCaaccgtag > 1:1272586/2‑143 (MQ=255) aCCCTCCCCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGGGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTg < 1:754983/149‑1 (MQ=255) aCCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTg < 2:350083/149‑1 (MQ=255) aCCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTg < 1:1562001/149‑1 (MQ=255) cccTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCATGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGc < 2:371565/149‑1 (MQ=255) ccTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGcc < 2:768220/149‑1 (MQ=255) cTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGccc > 2:45186/1‑149 (MQ=255) tCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGccgt > 1:836734/1‑147 (MQ=255) aCCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAACAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTGTGCCcttc > 1:644633/1‑149 (MQ=255) | GTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGC‑TGGCCCACGCCAACCGGCAAACTTTGCCCTTC > NC_000913/3390366‑3390660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |