| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,915,519 | T→A | 6.0% | intergenic (‑319/+34) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,915,519 | 0 | T | A | 6.0% | 252.9 / 5.0 | 95 | intergenic (‑319/+34) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| Reads supporting (aligned to +/- strand): ref base T (46/42); new base A (3/3); total (50/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.54e-01 | |||||||||||
CCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCA > NC_000913/3915378‑3915667 | ccTTAATTTAAGCGGCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGAc < 2:682788/149‑1 (MQ=255) ttAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTg > 2:1508921/1‑149 (MQ=255) ttAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCACCCTTTTTCCAGACTg > 2:1423223/1‑149 (MQ=255) ttAATTTAAGCGTCAGGTGGATGTTTTAGCTCTAATTTCGATCAATGAATAAACAGGAAAACAGGGGTGTTTTATATCAGCATGATCTATGTGAACGCAAGTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCGAGAcgg > 2:177479/1‑147 (MQ=255) aaTTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGc < 1:306085/149‑1 (MQ=255) aaTTTAAGCGTCAGCTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTCAACGCTAATCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGCCAGGc > 2:659176/1‑149 (MQ=255) ttAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCttt > 2:1524224/1‑149 (MQ=255) aGCGTCAGGTGTATGTTTTTGCTCTTATTTCGCTCAATGAATAAACAGGATAACACGGGGGTTTTATATCAGCAGGTTCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCTGCCTGTTTCCAGACTGGCTTTtgt < 1:1173906/149‑1 (MQ=255) gCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTtgtg < 1:721983/149‑1 (MQ=255) cGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAATCCAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGTCTGGAAACAGGCTGGCtttttttt < 1:823349/149‑5 (MQ=255) gTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt > 2:1093343/1‑149 (MQ=255) gTCAGGTGGATGTTTTTCCTCTTATTTCGATCAATTAATAAACTGTAAAACAGGGGGGTTTTATATCAGCTGTATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGTCTGGAAACAGGCTGGCttttttttg < 2:185025/149‑6 (MQ=37) aGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtttt < 1:1439432/149‑1 (MQ=255) aGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtttt < 1:583501/149‑1 (MQ=255) aTGTTTTTGCTCTTATTTCGATCAATGACTAAACAGGACAACAGGGGGGTTTTATATCAGCACGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGcc < 2:881549/149‑1 (MQ=255) gtgtttGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATAGCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCgg < 1:1111446/146‑1 (MQ=255) gTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCgg < 1:368286/149‑1 (MQ=255) gTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGATTTTGTGCTTTTCAAGCCgg > 2:309118/1‑149 (MQ=255) tttttGCTCCTATTTCGCTCAATGACTCAACAGGACAACAGGGGGGTTTTATATCAGCAGGATCTCTGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGgt < 1:1067097/149‑1 (MQ=255) tttGCTCTTATTTCGATCAATGAATAAACAGGAAAACA‑GGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGtt < 1:524323/149‑1 (MQ=255) ttGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGtt < 1:748770/149‑1 (MQ=255) gCTCTTATTTCGATCAATGAATAAACTGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATTTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCTGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCTGTGTTAc < 1:908489/149‑1 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACAt > 1:1263056/1‑149 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACAt > 2:106478/1‑149 (MQ=255) tctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACAt > 1:1362642/1‑149 (MQ=255) ttCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTAGATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGGTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCttt > 2:846568/1‑149 (MQ=255) cAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGt < 1:1317954/149‑1 (MQ=255) actGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTc < 1:1117357/147‑1 (MQ=255) tGAATAAACACGAACACAGGGGGGTTTTATATCACCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCaa < 2:24999/149‑1 (MQ=255) gAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAAc > 2:1521793/1‑149 (MQ=255) aaCAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGAt > 2:233596/1‑149 (MQ=255) aaCAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGACTGTTTCCAGACTGGCTTTTGTGCTATTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGAt > 1:961778/1‑149 (MQ=255) gacaaCAGCGGTGTTTTATATCACCCTGATCTTTGTGAACGCGATTCAGGACGGGTCCCACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAAcgc < 2:1060019/146‑1 (MQ=255) gAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGACAGCTATTCTGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAAcgc < 1:379031/149‑1 (MQ=255) gAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAAcgc > 1:1530449/1‑149 (MQ=255) aaaaCAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTGTTTTGGTCAACTCGATAAcgcg > 2:933360/1‑149 (MQ=255) aaCAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGCCTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCa > 1:1419582/1‑149 (MQ=255) gggTTTTATATCAGAAGGATCTATGTGAACGCTATTCAGGACGGGGCACTCGCGC‑AAAAAAAAGCCAGCCTGTTTCGAGACTGGCTATTGTGCTTTTGAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTgcgc < 2:1391156/149‑1 (MQ=255) ttttATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGGCTGTTTCCAGACTGGCTTTTGTGCTTATCAAGCCTGTGTTACATCGCTTTTTTGGTCAACTCGTTTACGCGCAGCTGCGCGAt > 1:318070/1‑149 (MQ=255) ttttATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGAt > 2:468639/1‑149 (MQ=255) tttATATCAGCAGGATCTATGTGAACGCTATTGAGGACGGGGCACACGCGC‑AAAAAAATGCCAGCCTGTTTCCACACTGGCTTTTGTGCTTTTCAAGCCGGTTTTACATCGCTTTTTTGGTCAAGTCGATAACGCGCAGCTGCGCGTTc < 1:493687/149‑1 (MQ=255) tttATAGCACCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTATCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATc < 1:1054793/149‑1 (MQ=255) tttAAATCAGCAGGATATATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTAAACTCGATAACGCGCAGCTGCGCGATc < 1:87522/149‑1 (MQ=255) tatCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCtt > 2:46937/1‑149 (MQ=255) atCAGCAGGATCTATGTGAACGCTATTCAGGACGGGGCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCttt < 2:309522/149‑1 (MQ=255) tCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCCGCCTGTTTCCAGACTGGCTTTTGTGCGTTTCAAGCCGGTGTTACATCGCTTTTTTGGTAAACTCGATAACGCGCAGCTGCGCGATCGCTTTg > 2:1538667/1‑149 (MQ=255) cagcctgATCTATGTGCACGCTAATCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCGGCGCGATCGCTTTgg < 2:321575/143‑1 (MQ=255) cgcagGATCTATGTGAACGCTATTCAGGACGGGTCCCACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGc < 2:673696/148‑1 (MQ=255) agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGt > 2:1081994/1‑113 (MQ=255) agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGt < 1:1081994/113‑1 (MQ=255) agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTGTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGc > 1:562134/1‑149 (MQ=255) gcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTATTCACGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAAAGCGCAGCTGCGCGATCGCTTTGGcc > 1:341257/1‑149 (MQ=255) cagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCa < 2:587010/149‑1 (MQ=255) ggATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCATTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGt < 1:618655/149‑1 (MQ=255) gATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt > 2:1196496/1‑149 (MQ=255) aTGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCa > 1:1544457/1‑149 (MQ=255) aTGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGCTCAACTCGATAACGCTCAGCTGCGCGATCGCTTTGGCCAGTTCCGCa > 2:1164226/1‑149 (MQ=255) tgtgAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAg > 1:708744/1‑149 (MQ=255) tgAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGAc > 1:1414141/1‑149 (MQ=255) tgAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTATTCAAGCCGGTGTTACATCGCTTTTTTCGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGCCCAGTTCCGCAGAc > 1:179992/1‑149 (MQ=255) gAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACg > 1:1305004/1‑149 (MQ=255) cTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCATACGCCTGa < 1:5927/149‑1 (MQ=255) tATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAg < 1:1537245/149‑1 (MQ=255) aTTCTGGACGGGTCACACGGGC‑AAAAAAAAGCCAGCCTGTTACCAGACTGGCTTTTGTGCTTTTCAAGCCGGAGTTACATCGCTTTTTTGGGCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGc < 1:1187558/149‑1 (MQ=255) aTTCAGGACGGGGCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGc < 2:9003/149‑1 (MQ=255) ttCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCATCTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg > 2:1252462/1‑149 (MQ=255) aGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGCCTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTATTTGGTCAACTCGATAACGCGCAGCTGCGCGCTCGCTTGTGCCAGTTCCGCAGACGCCTGCGCGTaa > 1:874047/1‑149 (MQ=255) aGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTATTGTGCTTATCAAGCCGGTGTTACATCGCTTATTTGGTCAACTAGAAAACGCGCCCCTGCTCGATACCTTTGGCCACTTCCGCACACGCATGAGCGTaa > 1:91164/1‑149 (MQ=255) ggACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTTCTTTTCAAGCCGGTGGTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCAAGTTCCGCAGACGCCTGAGCGTact > 1:865477/1‑147 (MQ=255) ggACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACAGGCGTTTGTGCTTTTCAAGCCGGGGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCAGCGCGATAGCTTTGGCCAGTTCCGAACAAGCCTGAGCGTaaa > 2:1407372/1‑148 (MQ=255) gACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCACCTCGATAACGCGCCGCTGCGCGCTCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATc > 1:1513199/1‑149 (MQ=255) tCACACGCGCAAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTATTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGt > 1:311028/1‑149 (MQ=255) tCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTc > 1:1401104/1‑149 (MQ=255) acacGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGc > 1:959501/1‑149 (MQ=255) cccgcgC‑TAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGcc < 1:134264/147‑1 (MQ=255) acGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCg > 2:655123/1‑149 (MQ=255) gcgc‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTg > 2:697044/1‑149 (MQ=255) c‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTgaga > 1:825259/1‑149 (MQ=255) aaaaaaaaGCAAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTATATGCTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTCagag > 2:637614/1‑149 (MQ=255) cacaaaaGCCAGTCTGGAAACAGGCTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgc > 1:769570/4‑149 (MQ=255) acaaaaGCCAGTCTGGAAACAGGCTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgct > 1:114743/3‑149 (MQ=255) aaaaGCCAGTCTGGAAACAGGCTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCTATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACTCCTGACCGTAATCTACGTCGCCGTGAGAgctgc > 2:263355/1‑149 (MQ=255) aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAgctgc < 2:1414141/149‑1 (MQ=255) agccagccTGTTTCCTGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTGGATAACGCTCAGCTGCGCGATCGCTTAGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTaa < 2:341257/149‑1 (MQ=255) agccagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTaa < 1:731895/149‑1 (MQ=255) gccagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAAt < 1:106478/149‑1 (MQ=255) gccagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAAt < 1:1508921/149‑1 (MQ=255) ccagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAAtg > 2:1479921/1‑149 (MQ=255) cagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAAtgt > 1:998211/1‑149 (MQ=255) cagccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTATTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAAtgt < 1:939249/149‑1 (MQ=255) gcgtGTTTCCAGACTGGCTTTTGTGCTTTTCACGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGc < 1:924492/146‑1 (MQ=255) gccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGc < 2:1401104/149‑1 (MQ=255) ccTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGCCGCCTGAGCGGAATCTACGTCGCCGTGAGAGCTGCTAATGTGca > 1:278830/1‑148 (MQ=255) cTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGctc < 2:526495/149‑1 (MQ=255) cTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGctc < 2:218270/149‑1 (MQ=255) tttCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTc < 1:233596/149‑1 (MQ=255) tttCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGC‑TTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCa > 2:658895/1‑149 (MQ=255) ttCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCa < 1:1093343/149‑1 (MQ=255) | CCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑AAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCA > NC_000913/3915378‑3915667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |