| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,169,384 | G→A | 5.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,169,384 | 0 | G | A | 5.9% | 276.9 / 6.6 | 103 | intergenic (+54/+28) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| Reads supporting (aligned to +/- strand): ref base G (47/48); new base A (4/2); total (51/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
GCAAAAAGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCAT > NC_000913/1169237‑1169531 | gcAAAAAGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTATTTTATAAATAAGCATAAACCGTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCgt > 2:700501/1‑149 (MQ=255)gcAAAAAGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTTACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGACgt > 1:872055/1‑149 (MQ=255) aaaaaGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTACCCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATTAGGATTAACCCTCATTTAGGCCTGCTACTGCTGATTTTTTCCCCGCGACATGGCgtgt > 1:914518/1‑149 (MQ=255) aaaaaGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCAGGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCGGCTTTTTTCCCCGCGACAGGCCgggt > 2:859435/1‑149 (MQ=255) aaaGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTcg > 1:1237700/1‑149 (MQ=255) aGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTcgcg < 2:1101757/149‑1 (MQ=255) aGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACACGGCATGTcgcg < 1:1348859/149‑1 (MQ=255) cGGATGAGATGGGCGCAAAAGCTTTCCGGATTACGTCTGTAACCGGTCCGACTACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACACGGCATGTCGCggg < 2:1142698/149‑1 (MQ=255) aTGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAtttttt < 1:1226718/149‑1 (MQ=255) gggCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTa > 1:1180238/1‑149 (MQ=255) gggCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTa > 1:401033/1‑149 (MQ=255) cAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCCTTAATGCCTGCTACTACTGATTTTCTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCgg < 2:331027/149‑1 (MQ=255) aaaaTCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCggg > 2:47790/1‑149 (MQ=255) tCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTTTAAATAAGCATTAACCCTCAGTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCGGTGTCGCCGGGATTTTTTTATCCggtcgtt > 2:1516805/1‑144 (MQ=255) tCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCttt < 1:614318/149‑1 (MQ=255) ttCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACa < 1:935263/149‑1 (MQ=255) cGTATTACTTCTGTACCCGGTCCGAATACCCTCCATGGAACAGCAGTAAGTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGATGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTGATACGGGCTGTACAGCg > 2:1049493/1‑149 (MQ=255) tatttACTTTTGAAACCGTACCTAAAACCCT‑CATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGtt < 1:1031536/146‑1 (MQ=255) aTTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGttt < 1:808889/149‑1 (MQ=255) ttACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTtg > 2:1440771/1‑149 (MQ=255) ttACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTtg > 2:586914/1‑149 (MQ=255) tACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTtgt < 2:1091356/149‑1 (MQ=255) aCTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTtgtg < 1:1449797/149‑1 (MQ=255) cTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCt > 1:314546/1‑149 (MQ=255) tAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTACCCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATTCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCAc > 2:1089652/1‑149 (MQ=255) tAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCAc > 1:11277/1‑149 (MQ=255) tAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCAc < 2:1220083/149‑1 (MQ=255) ccGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGAGTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtg > 2:494924/1‑149 (MQ=255) cGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtgt > 2:202051/1‑148 (MQ=255) cGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtga < 1:26133/149‑1 (MQ=255) cGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATAAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGGCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtga < 2:1126659/149‑1 (MQ=255) gTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCGTTACAGCGTTTGTGGGCGCACTtgatg > 1:698548/1‑149 (MQ=255) tCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTtgatga < 2:1237700/149‑1 (MQ=255) ccGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGAc < 1:1557428/149‑1 (MQ=255) gAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGAcgg < 1:47790/149‑1 (MQ=255) aTACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGAcggcg < 1:575063/149‑1 (MQ=255) cccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGGGTCGCGGGGATTTTTTTCTCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGAc < 2:464800/149‑1 (MQ=255) ccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGGGTTTGTGGGCTCACTTGATGCCGGCGGACa > 2:670443/1‑149 (MQ=255) ccTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCGCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATGTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACa > 1:77893/1‑149 (MQ=255) cATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTACCCCGCGACATGCGGGGTCGCGGGGTTTTTTTTTGCCGGGCTTAACGGCGTTTGTGGGCGCCATTGATGCCGGCGGCCAGccc > 1:470096/1‑148 (MQ=255) tGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCAcc > 1:1272800/1‑149 (MQ=255) ggAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGGGTCGCGGGGATTTTTTTATCCGGGATTTACCGCGTTTGTGGGCTCGCTTGCTGACGGCGGACATCCACCg > 1:845874/1‑149 (MQ=255) gAACAGCAGTAATTTATAACTAAGCATTCACCCTCATTAATGCCTGCTACTGCTGATTTATTCCCCGCGCCATGCCGTGTCGCGGGGATTTTTTTATCCGGGCGTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCgg < 2:905476/149‑1 (MQ=255) ccagcagTAATTTATAAATAAGCATTCACCCTCATTACTGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGGCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCa < 1:479382/148‑1 (MQ=255) agcagTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACCGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTATACAGCGTTTGGGGGCTCCCTTGATGACGGCGGACATCCCCCGACagc > 2:1357787/1‑147 (MQ=255) cagTAATTTCTAAATACGCATGTAGCCGCTTTAAACCCGGCTTCAGTTGATTGTTTCCGGGCGTAATTCATGTTCGAGGTGATTTTTTATTCAGGTCTTTACAGCGTTTGTGGGCTCTCTTGATGACGGCGGACTTCCACCGGCATccc < 2:275509/149‑1 (MQ=255) agTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGTATTTTTTTATCCGGGCTTTAAAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCg > 1:377999/1‑149 (MQ=255) agTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCg > 1:503253/1‑149 (MQ=255) gTAATTTATAAATAAGCATTAACCCTCATTAATGCATGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGCGATTTTTTAATCCGGGCTTTACAGCGGTTGTGGGCTCACATTATGCCTGAGGAAATCCACCGGCATcaggg > 2:189203/1‑145 (MQ=255) tttATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACg < 1:1078192/149‑1 (MQ=255) tataAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGa > 2:528701/1‑149 (MQ=255) aaataaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGActt > 1:1225769/1‑147 (MQ=255) aaataaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcat < 1:859435/149‑1 (MQ=255) aaataaGCATTAACCCTCAGTAATGCCTGCTACTGCTTATTTTTTCCCCGCGCCCTGCCGTGTCGCGGGGAGTGTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCCCATGAGGACGGCGGACAGCCACCGGCCTCCCGGAGCGGAcat > 2:1566333/1‑149 (MQ=255) aataaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatc < 2:5326/149‑1 (MQ=255) ataaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatcc > 2:497458/1‑149 (MQ=255) aaGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatccat < 1:885302/149‑1 (MQ=255) aGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACATCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatccatc < 2:137285/149‑1 (MQ=255) aGCATTAACCCTCATTAATGCCTGCTACTGCTGATGTTTTCCCCGCGACATGCCGGGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGAcatccatc < 2:1259463/149‑1 (MQ=255) gCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATca < 2:572913/149‑1 (MQ=255) ttAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACAt < 2:1515288/149‑1 (MQ=255) aCCCTCATTAATGCCTGCTACTGCTGATTTTATCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGtt < 2:914518/149‑1 (MQ=255) aCCCTCATTAATGCCTGATACTGCTGATTTTTTCCCCTCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGtt < 1:126774/149‑1 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATTCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTga > 2:682673/1‑148 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCTGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGc > 2:515392/1‑149 (MQ=255) ccTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGCCATCCCCCGGCATCCCGGAACGGAGATACATGACATGTTGc > 1:1062963/1‑149 (MQ=255) cTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGATTTACAGCGTTTGTGGGCTCCCTTGATGACGGCGGACATCCACCGGCATCCCGGAACGCACAGCCGTCCCATGTTGCa > 2:280657/1‑149 (MQ=255) cTCAATTATGCCTGCTACTTCTGATTTTTTAACAGGGAGATTCCGTGTAGAGGGGATTTTTTTATCCGGGATTTAATTCGTTTGTTGGCTCAATAGATGACTGCGGACATCCATCGTCATCCCGGAACGTACATCCATCACATGTTGCa < 2:411225/149‑1 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCa > 1:459670/1‑149 (MQ=255) aTTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCa > 2:501784/1‑149 (MQ=255) aaTGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACtt > 2:913184/1‑149 (MQ=255) aTGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGCACGGACATCCATCACATGTTGCATCACTTc > 1:1338683/1‑149 (MQ=255) gtACTCCTGATTTTTTGCCCGCGACAGGCCGGGTCGCGGGGATTTTTTTAAGCGGGCTTTACAGCGTTTGTGGGCTGACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCTTCACATGTTGCATCACTTCAGCGTCa < 2:549313/148‑1 (MQ=255) cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCa < 2:1272800/149‑1 (MQ=255) cTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCa < 1:134166/149‑1 (MQ=255) tACTGCTGATTTTTTCCCCGCGACATTCCGTGGCGATGGGATTTTTTTATCCTGGGTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGCCATACACCGGCATCCCGGACCGGACATCCCTCACATGGTGCCGCCCTTCAGCGTCAg > 1:1049330/1‑149 (MQ=255) ctgctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGtt > 1:1175110/1‑149 (MQ=255) tgctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGttt < 2:1180238/149‑1 (MQ=255) gctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTtg > 2:331792/1‑149 (MQ=255) ctgATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTtgt < 2:902272/149‑1 (MQ=255) gATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACAGCCATCACATGTTGCATGACTTCAGCGTCTGTTtgtgg > 1:506321/1‑148 (MQ=255) gATTTTGTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCTGTTTTtgc < 2:178966/149‑1 (MQ=255) aTTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACGTCCATCACATGTTGCATCACTTCAGCGTCAGTTTGtgct > 1:847042/1‑149 (MQ=255) ttttttCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGtgctg < 1:700501/149‑1 (MQ=255) aaaaatCCCCGCGACACGGCATGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGtgctg > 2:590438/6‑149 (MQ=255) aaaaatCCCCGCGACACGGCATGTCGCGGGGATTTTTTTATCCGGCCTTTACAGCGTTTGAGTGCTGACTTGATGAAGGCGGACATCCACCGGCATCCCGGAACGGACATCCAGCACATGTTGCATCCCTTCAGAGTCAGTTTGagctg > 2:476904/6‑149 (MQ=255) tttttCCCCGCTACATGACTTGTCGCGTGTATTTTTTTATTCGGGCTTTAGTGCTTTTGTGGGATCACTTGATGACGGCTTACATCCACCGGCATCCCGGAACGGACATCGATCACATTTTGCATCACTTCAGCGTCATTTTGtgctgc < 1:82784/149‑1 (MQ=255) tttttCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTGGTGGGCTCACTTGATGACGGCGGACATCCGCCGGCATCCCGGAACGGGCGTCCATCAGAGGTTGCATGCCGTCCGCGTGAGTTGGtgcggg > 2:1534983/1‑146 (MQ=255) tttCCCCGCGACATGCCGTGGCGCGGGGATTTTTTTAACCGGGCTTTAGAGCGTTTGTTGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCAt < 1:754972/149‑1 (MQ=255) ccccGCGACACGGCATGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCCCTTCAGCGTCAGTTTGTGCTGCATCtt > 1:877906/1‑149 (MQ=255) cccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCCTCACTTCAGCGTCAGTTTGTGCTGCATCttt > 1:729871/1‑149 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTa > 2:473901/1‑149 (MQ=255) ccGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTATACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTCGATCACTTCAGCGTCAGTTTGTGCTGCTTCTTTa > 2:1092737/1‑149 (MQ=255) ccGCGACACGGCATGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGCCGGCGGACATCCACCGGCATCCCGGCACGGACATCCATCACATGTTGCCTCACTTCAGCGTGAGTTTGTGCTGCATCTTTa > 2:123104/1‑149 (MQ=255) gcgACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTaaa > 1:801721/1‑149 (MQ=255) gcgACATGCCGGGTCGGGGGGATTTTTTTATCCGGGCTTTACAGCGTGTGTGGGCTCCCTTGATGACGGCGGACATCCACCGGCATCCCGTAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTaaa < 2:845874/149‑1 (MQ=255) cgACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTTTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAAt < 2:872055/149‑1 (MQ=255) cgACATGCCGTGCCGGGGGGATTTTTTTATCCGGGCTTTACAGCGGTTGGGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAAt < 2:428197/149‑1 (MQ=255) aCATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTTAATGa > 2:451638/1‑149 (MQ=255) cGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGattgcat < 2:801721/149‑1 (MQ=255) | GCAAAAAGCGGATGAGATGGGCGCAAAATCTTTCCGTATTACTTCTGTAACCGGTCCGAATACCCTCCATGGAACAGCAGTAATTTATAAATAAGCATTAACCCTCATTAATGCCTGCTACTGCTGATTTTTTCCCCGCGACATGCCGTGTCGCGGGGATTTTTTTATCCGGGCTTTACAGCGTTTGTGGGCTCACTTGATGACGGCGGACATCCACCGGCATCCCGGAACGGACATCCATCACATGTTGCATCACTTCAGCGTCAGTTTGTGCTGCATCTTTAAATGATTGCAT > NC_000913/1169237‑1169531 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |