New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4542690118 (1.460)8 (0.110) 8/278 7.9 7.2% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 95 (1.260)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGG  >  NC_000913/4542842‑4543133
                                                                                                                                                |                                                                                                                                                   
gtgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGc                                                                                                                                                 <  1:738688/149‑1 (MQ=255)
 tgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATTCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCATCAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGcc                                                                                                                                                <  2:807872/149‑1 (MQ=255)
   gCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGcccc                                                                                                                                              >  1:1077045/1‑149 (MQ=255)
   gCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGcccc                                                                                                                                              >  2:344077/1‑149 (MQ=255)
    cTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGAGATGCTTTCCTCTATGATTCAAAATGGCCCCa                                                                                                                                             >  2:198402/1‑149 (MQ=255)
     tCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGATAAAGTGTGTCCGCGATGCTTACCTCTATGAGTCAAAATGGCCCCaa                                                                                                                                            >  2:395669/1‑149 (MQ=255)
       gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCAAACAAATAATCTGAAAAAGTTTGTCAGCGATGCTTTCCTCTATGAGTCAAAATGGACCCAAAt                                                                                                                                          >  2:891536/1‑149 (MQ=255)
          gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                       <  1:329869/149‑1 (MQ=255)
          gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                       <  1:873185/149‑1 (MQ=255)
           cATCTTCCTCATTCTTATCTCCAAAAACCACCTCATGAAAAATAAACATCTATAAATAAAGATAACAATAGAATATTAAGACAACAAATAAACTCAAAAAGTTTGTCAGCGATGCTTTCCTCTATGAGTCAAAATGGCCCAAATTGtct                                                                                                                                      >  2:1210249/1‑147 (MQ=255)
            ctCTTCCTCATTCTTCTCTCCAAATACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAATTGtctt                                                                                                                                     <  1:1142879/148‑4 (MQ=255)
                    cATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg                                                                                                                             <  2:1077045/149‑1 (MQ=255)
                     aTTTTTCTATACAAAAACCACCTCATTCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGACAACAAATAAACTGAAATAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAATTGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            <  2:815568/149‑1 (MQ=255)
                     aTTCTTCTCTCCAAAAACCACCTCATGCAATATTAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGGCCCAAATGTTTCATCTTTTgg                                                                                                                            <  1:38942/149‑1 (MQ=255)
                      ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                           <  1:349483/149‑1 (MQ=255)
                      ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                           <  1:72971/149‑1 (MQ=255)
                         ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCAGCTATGAGTCAAAATGGCCCCAAATGATTCATCTATTTGGGGa                                                                                                                        >  2:725250/1‑149 (MQ=255)
                          tctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATATAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCACCAAATGTTTCATCTTTTGGTGGaa                                                                                                                       >  1:139252/1‑149 (MQ=255)
                           atctcCAAACACCACCTCATGCAATATAAACATCTATAAATAAAGAAAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa                                                                                                                      <  2:277111/148‑1 (MQ=255)
                            tctcCAAAAACCACCTCATGCAATATAAATATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCTATGCTTTCATCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa                                                                                                                     >  2:90923/1‑149 (MQ=255)
                             ctcCAAACACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAAGAAATAAACTGAAAAAGTTTGTCCGCGAACATTTCCGCTATGAGTCAAAATGGCCCAAAATGTTTCATCTTTTGGGGGAAAAc                                                                                                                    >  1:671522/1‑149 (MQ=255)
                              tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGTCCCCAAATGTTTCATATTTTGGGGGAAAACt                                                                                                                   >  1:721691/1‑149 (MQ=255)
                              tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt                                                                                                                   <  1:696140/149‑1 (MQ=255)
                               ccAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAGGCCAACAAATAAACTGAAAAAGTTTTTCCGGGGTGATTTCCTGATTGAGTCTAAATGGCCCGTAAGGGTGGATCTTTTGGGGGagatgtg                                                                                                                  >  1:1300617/1‑143 (MQ=255)
                                cAAAAACCACCTCATGCTATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCATATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 <  1:816095/149‑1 (MQ=255)
                                cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAATTTTGTCCGCGATTCTTTCCTAATTGAGTCAAAATTGCACAAAATGTTTCATATTATATGTGAAAACtct                                                                                                                 >  1:880026/1‑147 (MQ=255)
                                cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATTAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 >  2:682455/1‑149 (MQ=255)
                                cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGATTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 >  1:343508/1‑149 (MQ=255)
                                cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATAATAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATTATTTCCTATATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAgtgt                                                                                                                 >  2:1150093/1‑149 (MQ=255)
                                cAAAAACCACCTCAAGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 <  2:308648/149‑1 (MQ=255)
                                aaaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAAAAAATAAACTGAAAAAGTTTGTACGCGATGCTTTCCTCTATGACTCAAAATGGCCCCAATTTATTCATCTTTTGGGGGAAAACtgt                                                                                                                 >  2:814394/2‑149 (MQ=255)
                                  gaaaCCTCCTCATGCAATATAACCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACTAATAATCTGAAAAAGTTTGTCCGGGTTGATTTCCTCTATGAGTAATATTGGCCCCTATTGTTGCATCGTGTGGTGGAAAACTGGGc                                                                                                               >  2:708860/2‑149 (MQ=255)
                                    aaCCACCTCATGCAATATAAACATCTATAAATAAAGATTACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGAGCAg                                                                                                             >  1:1077464/1‑149 (MQ=255)
                                         ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                        >  2:122524/1‑149 (MQ=255)
                                                cAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgtcagtca                                                                                                 >  2:1236321/1‑149 (MQ=255)
                                                  atatAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTATGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                                                               <  2:802180/149‑1 (MQ=255)
                                                   tataAACTTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTACGCGATGCTTTACTCTATGAGTAAAAATGGCCCAAAATGTTTAATCTTATGGGGGAAAACTGTGCAGAGTTAGCAGTAAAAc                                                                                              >  1:717664/1‑149 (MQ=255)
                                                   taaaaaCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc                                                                                              <  2:164180/146‑1 (MQ=255)
                                                      aaaCCTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                                                           >  2:626903/1‑149 (MQ=255)
                                                      aaaCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                         <  1:704241/135‑1 (MQ=255)
                                                      aaaCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                         >  2:704241/1‑135 (MQ=255)
                                                        aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTTTTGGCAGTCAAACTCGtt                                                                                         >  2:1288704/1‑149 (MQ=255)
                                                        aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                         >  1:805224/1‑149 (MQ=255)
                                                         cATCTATAAATAAAGATTACAATAGAATATTAAGCCATCAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt                                                                                        <  1:1035637/149‑1 (MQ=255)
                                                           tCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac                                                                                      <  2:1255571/149‑1 (MQ=255)
                                                             tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAATCTGAAAAAGTTTGTCCTCGATGCTTTACTCTATGAGTAAAAATGGCCCCAAATCTTTAAACTTTTGGGGGAAAACTGTTCAGTGTTTGCAGTCAAAATCTTTTacaa                                                                                    >  1:1292201/1‑149 (MQ=255)
                                                              ataaataaAGATAACAATAGAATATTAAGCCAACAAATATACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                   >  1:938970/1‑149 (MQ=255)
                                                              ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                   >  1:1301822/1‑149 (MQ=255)
                                                                 aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTGTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAGCGTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGGTTacaaaaca                                                                                >  1:456008/1‑149 (MQ=255)
                                                                   taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                              <  1:725250/149‑1 (MQ=255)
                                                                   aaaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAATTTTGTCCTCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                              <  2:484579/148‑1 (MQ=255)
                                                                     aaGATAAAAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCGAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt                                                                            <  1:328094/149‑1 (MQ=255)
                                                                      ataTAACAATAGAATATTAAGCGAACATATAAACTGTAAAAGTTTGTACGCGATGCTTTCCTCTATGAGTAAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAATTCTGTGCAGTGTTGGCAGTCAATCTCGTTTACAAAACAAAggg                                                                           <  1:198402/147‑3 (MQ=255)
                                                                        aTAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCCCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGAAGTCTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa                                                                         >  1:117132/1‑149 (MQ=255)
                                                                             aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                    <  2:814954/149‑1 (MQ=255)
                                                                             aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGGCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                    <  2:864673/149‑1 (MQ=255)
                                                                               tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                                                                  >  2:230859/1‑149 (MQ=255)
                                                                                     tttAAGCCAACAAATAAACTGAAAAAGTATGTCCGCGATTCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                                                            <  1:459706/148‑1 (MQ=255)
                                                                                      ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                           <  2:721691/149‑1 (MQ=255)
                                                                                        aatgctacaaATAACCTGAAAAAGTTTGTCCGCGATGCTTTACTCTATGAGTCAAAATGGCACCAAATGTTTCATCTTTTTGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCAt                                                         <  1:914564/143‑1 (MQ=255)
                                                                                            caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGTGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACATAACGACTGGCCATGTCg                                                     >  1:1301980/1‑149 (MQ=255)
                                                                                            caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCg                                                     >  2:1077825/1‑149 (MQ=255)
                                                                                                aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                 >  2:1111426/1‑149 (MQ=255)
                                                                                                       cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATa                                          >  1:1119056/1‑149 (MQ=255)
                                                                                                          aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtt                                       >  2:255024/1‑149 (MQ=255)
                                                                                                          aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtt                                       >  1:5244/1‑149 (MQ=255)
                                                                                                          aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTGTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACCGAAAGCCTGCCCATGTCGATTTTGAAATAGtt                                       >  2:978586/1‑149 (MQ=255)
                                                                                                            aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCATAATGGCCCCAAATGTTTCAGCTTTTGGGGGAAAACTGTTCAGTGTTGGCAGTCAAACTCGTATACAATACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtatt                                     >  2:52993/1‑149 (MQ=255)
                                                                                                            aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTTGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                     <  1:90923/149‑1 (MQ=255)
                                                                                                            aaaGGTTGTCCGCGATGCGTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGTGTGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                     <  1:1292063/149‑1 (MQ=255)
                                                                                                             aaGTTTGTCCGCGATGCTTTCCTCTATGATTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGGTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                    <  2:312595/149‑1 (MQ=255)
                                                                                                             aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                    <  2:248003/149‑1 (MQ=255)
                                                                                                             aaGTTTGTCCGCGAGGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                    <  1:1040260/149‑1 (MQ=255)
                                                                                                              aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                   <  1:325753/149‑1 (MQ=255)
                                                                                                              aGTTTCTCCGAGATGCATTCCTCTATGAGTCAAACTGGCCCCAATTGTTTCATCTAGTGTGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAAGAAAGTATACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                   <  1:708860/149‑1 (MQ=255)
                                                                                                                      cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                           >  2:92070/1‑149 (MQ=255)
                                                                                                                      cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGGTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                           >  2:865658/1‑149 (MQ=255)
                                                                                                                      cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTACATCGTTTGGGGGAAAACTGTGCAGTGTTGGCAGGCAAACGCGGTTACAAAACTAAGTGTACATAACGCCTTCCCATGGCGATTTAGAAATAGTTGTTTgaaagtaa                           >  2:722197/1‑149 (MQ=255)
                                                                                                                         gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagc                        <  1:676161/149‑1 (MQ=255)
                                                                                                                            gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcagc                     <  1:344077/149‑1 (MQ=255)
                                                                                                                              tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCAt                   >  1:1109689/1‑149 (MQ=255)
                                                                                                                               ttCCTCTATGAGTCAAAATGGCCCCAAAGGATTCAACTTTTGGGGGAAAACTGTGCAGTGTTGGCAGACAAACTCGTTTAGAAAACAATGTGTAGCGAACGGCTGCCCTTGTAGTTTTAGAAATAGTTTTTTGAAAGGTACGCAGCATg                  >  2:1008087/1‑149 (MQ=255)
                                                                                                                                     tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAtt            >  1:996856/1‑149 (MQ=255)
                                                                                                                                     tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa           >  2:1062833/1‑149 (MQ=255)
                                                                                                                                      aTGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa           >  2:960812/1‑149 (MQ=255)
                                                                                                                                       tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGAATGAAAATTaa          >  1:313915/1‑149 (MQ=255)
                                                                                                                                       tGAGTCAAAATGGCCCCAAATGTATCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa          <  1:534954/149‑1 (MQ=255)
                                                                                                                                       tGACTCAAAATGGCCACAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa          <  1:395669/149‑1 (MQ=255)
                                                                                                                                        ttcgcAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa         <  2:1125872/145‑1 (MQ=255)
                                                                                                                                        tactCAAAATTGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTTCATTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGAACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaca         <  1:1276815/146‑3 (MQ=255)
                                                                                                                                        gAGTCAAAATGGCCGCAAATGTTTCATCTTTTGGGGGATTACTGTGCAGTGTTGGCAGTCAAACTCGTGTACAAACCAAAGTGTTCAGAACGACTGCACATGTCGATTTAGAATTAGTTTTTTGAAAGGAAAGCAGCATGAAATTTaaa         <  1:982939/149‑1 (MQ=255)
                                                                                                                                         aGTCAAAATGGCCCCAAATGATTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaaa        <  2:1084145/149‑1 (MQ=255)
                                                                                                                                          gacAAAATGGCCCCAAATGTTTAATCTTTTGGGGGTAAACTGTGCAGTGTTGGAAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGCGTGCCGATGTAGAATTAGAAATAGTTTTTTGAAAGGAGAGCAGAattaaaattaaacc       >  2:1286647/3‑147 (MQ=255)
                                                                                                                                          gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACATAACAAAGTGTACAGAACGACTGCCCATGTCGTTTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAc       >  1:323722/1‑149 (MQ=255)
                                                                                                                                           tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct      >  1:284466/1‑149 (MQ=255)
                                                                                                                                           tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct      >  1:173099/1‑149 (MQ=255)
                                                                                                                                           tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct      >  1:811200/1‑149 (MQ=255)
                                                                                                                                             aaaaTGGCCCCATATGTTTCATCTTTTGGGGGAAAAATGTGCAGTGTTGGCAGTCAAACTCTTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct    <  1:351104/149‑1 (MQ=255)
                                                                                                                                             aaaaTGGCCCCAAATGTTTCATCTTTTGTGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCTTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct    <  1:814394/149‑1 (MQ=255)
                                                                                                                                               aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGAAGCATGAAAATTAAAACTCTgg  >  1:287511/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
GTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGG  >  NC_000913/4542842‑4543133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.