| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 23.2% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 23.2% | 345.5 / 49.3 | 253 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (79/111); new base C (8/55); total (87/166) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 254 total aligned reads displayed.
CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > NC_000913/164433‑164727 | cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:8881506/1‑150 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 1:7645810/1‑150 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 1:10607746/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGt > 2:9828039/1‑150 (MQ=255) agagATGAACGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAATTACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGTTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc < 2:1200912/150‑1 (MQ=39) ttttaaggggCTTTACCCCAAACTGGGCGGGCCGGACGCCCCGCAAAATAGTG‑CACCGACGCGACGGACTAAAATTTTTTGTTATGTTTTTTTTTCCCCCTCCCCGGGGGGGTGTGGGCGGGGGTTTGGGCATCAGCGCGCACGTtcacc < 2:9390445/143‑1 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggccca > 2:5771373/1‑143 (MQ=255) gAATGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGAGGGACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctc < 2:6747533/150‑1 (MQ=255) aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctca < 2:10063433/150‑1 (MQ=255) aGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATCCTG‑CCCCGACGCGACGGACGAAAAAGTTTTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:2561919/150‑1 (MQ=255) aGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTTTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:6887150/150‑1 (MQ=255) gCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcacccacccccga > 2:1676694/1‑148 (MQ=255) tttATCCCAAACTGGGGGGGCGGGACGACCGGGAAAATACTG‑CACCGACGCGAGGGACTAAAAAGTATTGTTATGGTTGGTTTTCTCCCTCCCCCTGTGGTTGAGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:9790605/149‑1 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGGTGACcccaaccccaac > 2:373265/1‑150 (MQ=38) ttATCCCAACCAGGTCTGGCCGGCCGACCGGGCAAATACTG‑CACCGCCGCGCCGGACTAAAAATTTTTCGTACGGTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc < 2:7899557/150‑1 (MQ=25) ttATCCCAAACTTGTCGGGCCGGACGACCCGGCAAATCCTG‑CACCGACGCGACGGACGAAAAAGTATTCTTACGGTTGGTTTTCGCCCACCCCCGGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc < 2:6976897/150‑1 (MQ=255) ttAGCCCAAACTGGTCTGGCCGGACGACCGGGCAAATACTG‑CACCGCCGCGAGGGACGAAAATGTTTTCGTACGGTTGGTTTTCTCCCTCCCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc < 2:5787398/150‑1 (MQ=37) ccAACCATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:11009585/150‑1 (MQ=255) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCTCACCCGaagacacta > 2:5469871/1‑143 (MQ=255) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGAACCACACCCGAAcccacac > 2:3186467/1‑146 (MQ=38) aaaCATGTCTGGCAGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTAACCCACAACCAAAaccacacac > 1:6623919/1‑144 (MQ=37) ctggTCGGGCCGGACCCCCCGGAAATCCCGG‑CCCCGACGCGCGGGCCGAAAAAGTTTTGGTTGGGTGGGTTTTCTCCCCCCCCCGGTGGGTGTGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCa < 2:2028699/147‑1 (MQ=255) aTGTCGGGCCGGACGACCCGGAAAATACTC‑CACCGACGCCACGCACTAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCCCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:7989721/150‑1 (MQ=38) tggcgggCCGGACGCCCCGGAAAATACTG‑CACCGACGCGACGGACTAAAATGTATTCGTATGGTTGGTTTTCTCCCTCCCCCTGTGGGAGAGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:8711731/145‑1 (MQ=255) tCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTCGTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTGCACCCGCACCCGAACCCCCACCCACACggg > 2:4793137/1‑150 (MQ=37) ggCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACTAAAATTTTTTGGTATGGTTGTTTTTCTCCCTCGCGCTGTGGTCGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 1:9157925/150‑1 (MQ=255) ggCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCACCCTCTCCCGGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 2:821401/150‑1 (MQ=255) gcgggccgacCCGGCAAATCCTG‑CACCGCCGCGACGGACGAAAAAGTTTTCGTATGGTTGGTTTTCTCCCTCGCCCGGTGGGAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgagat < 2:5423386/144‑2 (MQ=255) gCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCCAACCCACACCCACaaccgggag > 2:10358322/1‑143 (MQ=37) cgggccgacCC‑GCAAAAACCGCCACCGAGGCGCCGGACGAAAATGTTTTCGTATGTTGGGTTTTCGCCCCCCCCGGGGGGGTTTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 1:4417494/145‑1 (MQ=255) ccGGACGCCCCGCAAAATCCTC‑CACCGCCGCGCCGCACTAAAATTTTTGCTTTTGGTTGGTTTCCCCCCTCTCCGTGTGGGAGTGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgg < 1:6398284/150‑1 (MQ=255) ccGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCAAAACCACACCCCCCAgggggggg > 1:1202921/1‑145 (MQ=25) ggtcgccccGCCAAATACGG‑CCCCGCCGCGCCGCACTAAAATGTTTTCTTATGGTGGGTTTACTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTTGAGGGAGAgggt < 1:10416188/144‑2 (MQ=255) cgacCCGGCAAATACGG‑CCCCGACGCGACGGACGAAAAAGTATTCGTATGGTTGGTTTTCGCCCCCTCCCGGTGGGTGTGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:10717633/150‑1 (MQ=255) tcccGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGCCCCACCCCCAAACCCACGCCCACCCGGGCGGGGGGGCCgc > 1:1802127/2‑149 (MQ=25) acCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCACCCCCACCCGCACCCACACGGGGGCGGGGGcccg > 1:8600067/1‑148 (MQ=25) ccGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAACCCACACCCACAAGGGGGCGGGGGCCGCTc > 1:10193711/1‑150 (MQ=37) ccGGCAAAACCAC‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:9692227/150‑1 (MQ=38) ccGGCAAAAACTG‑CACCGACGCGAGGGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:6451638/150‑1 (MQ=255) cGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAAACCACTCCCTCAAGGGAGAGGGGGCCGATCg > 2:7363665/1‑150 (MQ=38) cGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCACCCCAAACCACAACCCCAACGGCGAGGGGGcccaaag > 2:4322513/1‑145 (MQ=25) gaaaaTCCTG‑CCCCGACGCGCCGGACTAAAAATTATTCGTAAGGTTGGTTTACTCCCTCGCCCTGTGGTAGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 1:6783149/148‑1 (MQ=255) gCAAATACTG‑CACCGACGCGACGGACGAAAAAGTGTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCACCCACAACCCCACCCCCACCGGGGAGGGGGCCgggaggg > 1:2340931/1‑144 (MQ=21) aCTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACCCCCCAAACCGCACCCACAAGGGGGAGGGGGCCGATAGAGCCCaaa > 1:5416018/1‑150 (MQ=25) aCTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCAAACCCACACCCCCACGGGGGAGGGGCCCGCTCGTGCACaaa > 1:7103696/1‑150 (MQ=25) cACCGACGCGACGGACGAAAAAGTATTCGGAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGTCCCCCGCACCCGAACCCACACCCCCCCGGGGGGGGGGCCCCGTCGGGCCCCAAtttt > 2:7298613/1‑150 (MQ=21) ccgccgCGCCGTACGAAAAAGTATTCTTCCGGTGGGTTGTCCCCCGCGCCCTGTGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:4262030/150‑1 (MQ=255) ccgccgCGAGGTACTAAAAAGTATTGGTAGGGTGGTTTTTCTCCCTCTCCCTGGGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:4298478/150‑1 (MQ=37) ccgccgCGACGGCCGAAAAATTATTGGTAGGGTTGGTTTTCTCCCTCCCCGGGTGGGTGCGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:5231854/150‑1 (MQ=255) ccgccgCGACGGACTAAAATGTATGCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:10866627/150‑1 (MQ=255) ccGACGCGCCGGACTAAAAAGTTTTCGTCCGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:9889806/150‑1 (MQ=255) ccGACGCGCCGGACTAAAAAGTATTCGTATGGTGGGTTTTCTCCCTCTCCCTGGGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:3525055/150‑1 (MQ=255) ccGACGCGACGTACTAAAATTTATTCTTATGGTGGTTTTCCGCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:6938040/150‑1 (MQ=37) ccGACGCGACGGACTAAAACTTTTTCGTAAGTTTGGTTTTCTCCCTCCCCCTGGGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:7379325/150‑1 (MQ=38) ccGACGCGACGGACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:11093008/150‑1 (MQ=255) ccGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCAAACCCAAAACCACACACACAAGGGGGAGGGGGCCGAAAGAGCCCAAAatttta > 1:9098699/1‑148 (MQ=21) gcgacgGACTAAAAAGTATTCGTAAGGTTGGATTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGat < 1:9973545/150‑1 (MQ=255) gcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCGCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGat < 2:10056570/150‑1 (MQ=255) cgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAACAGCGCGCACGTTCACCCGCACCCGAACCCACTACCGCAAGGGCGGGGGGCCCGATCGAGCACAAAATTTgagagaaa > 2:9164962/1‑148 (MQ=37) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGAACCCCACCCAAAACCGCAACCACCAGGGAGGGGGGGCCCGGCGAGCACAAAATTTTAGTGGTAtatt > 1:8162743/1‑150 (MQ=16) gaccAAAATGTTTTCTTACGGTGGGTTCGCCCCCTCGCCGGGGGGGTGCGGGCGGGGGGTCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc < 1:3016227/150‑1 (MQ=255) gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCCCACCCAAACCCACACCCACACCGGAGAGGGGACCCAGCGACCACCAAAATTTAGAGATAtcttattc > 2:4516856/1‑150 (MQ=21) aatttATTCGTTTGGTTGTTTTTCGCCCTCTCCCTGTGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt < 1:1637537/146‑1 (MQ=255) tttCTTACGGTGGGTTTACTCCCTCTCCCGGTGGGTGTGGGCGGGGGTGTGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGt < 2:9405387/149‑1 (MQ=255) cGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:7111709/150‑1 (MQ=255) ttttggttgtttTTCTCCCTCGCCGGGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 2:8384/146‑1 (MQ=255) gtttggtgggttTGCTCCCTCGCCGGGGGGGTGGGGGCGGGGGGGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:9501670/146‑1 (MQ=255) aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 2:5941244/150‑1 (MQ=255) tgggttTTCTCCCTCTCCCTGTGGGCGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:3423140/148‑1 (MQ=255) tggttTTCTCCCTCTCCGTGTGGGTGTGGGCCGGGGTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 1:6135264/150‑1 (MQ=255) gggttGTCTCCCTCCCCCTGTGGGTGCGGGCCGGGGTGAGCGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 1:8967225/149‑1 (MQ=255) tctccctctcccTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 2:1355471/150‑1 (MQ=255) gccctctcggtGTGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 2:7645810/149‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCGCACCCGAACCCGATCCCGCCAGGGAGGGGGGGCCGGTCGGGCCCCAATTTTGTGAGGTATCTTCTTCAGTCTTGTTACAGGAGCACAGAAAATCg > 2:2696207/1‑150 (MQ=21) cctcgccctGTGGGAGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 1:10038001/150‑1 (MQ=255) ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCAAAACCACTCCCGCAAGGGGGAGGGGGCCGGTCGGGCACAAAATTTGTGGGATATATTATTATGTCTTTTAACAGAAGAAAAGAAAATCGGGCgtt > 2:7262620/1‑150 (MQ=19) cctGGGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 1:10720002/150‑1 (MQ=255) tgggtgggGGCGGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 2:6835720/150‑1 (MQ=255) ggcgggggCGGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:4932802/145‑1 (MQ=255) gagtGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTg < 2:284490/150‑1 (MQ=255) agagGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCGAACCCACTCCCACAAGGGAGAGGGGGCCGAACGAGCACAAATTTTGTGAGATATCATCTTCTGTCGTGTAACAGAAGAACCGAAAAAAGGGCTTTTGCGCCGGa > 2:10987088/1‑150 (MQ=255) gagGGCCGGGGTTAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTTCGCCTGaa < 2:2641772/150‑1 (MQ=255) gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 1:11131818/150‑1 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCAAAACCACACCCACAAGGGGGAGGGGCCCCACAGAGCACAAAAGTTTGGAGAAATAATATTCTTGGGTGTAAAAGAAGTACAGAAAATCGGGCGTTTTCGCCAGtataa > 2:2578007/1‑149 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCCCACCCGAACCCGCTCCCGCCAGGGCGAGCGGCCCCCTCCCGCCCCAATGGTGAGAGATAAATTCTTCTGGCGGGGAACAGCAGAACCGCACAGCGGGCGGTTGCGCCGGacgag > 2:10122746/1‑146 (MQ=255) cGGGGTGCGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATGTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 2:8997364/150‑1 (MQ=255) cGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:7653905/150‑1 (MQ=255) cGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:7535004/150‑1 (MQ=255) cGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:10113578/150‑1 (MQ=255) ggggTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGGAGAACTGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:5110124/150‑1 (MQ=255) ggggTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:11005171/150‑1 (MQ=255) ggggTGCGGGCCTCAGCGCGCACGTTCACCCTCACGCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:7557684/150‑1 (MQ=255) ggggTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:5923829/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:8331718/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:3329714/150‑1 (MQ=255) ggggTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:4676592/150‑1 (MQ=255) ggggcgggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:1070607/145‑1 (MQ=255) ggTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:8106545/150‑1 (MQ=255) tGAGGGCCTCAGCGCGCACGTTCACCCACACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgaga < 1:5645625/150‑1 (MQ=255) ggCATCAGCGCGCACGTTCACCCACACCCAAAACCACAACCACAAGGGAGAGGGGACCCATCGAGCACAAAATTTGAGAGAAATAATATTAATTATTGTAACAGAAGAAAACAAAAACGGGCTTTTTCGCCAGAATATTTCGGAGaaaaa > 2:8279411/1‑150 (MQ=255) | CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTG‑CACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAA > NC_000913/164433‑164727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |