BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566098 =	93 (1.040)	12 (0.150) +GAGAGGAGGATTACAAA	7/222	NT	9.4%	pseudogene (279/279 nt)	exoD	pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related
*	?	NC_000913	4397412 =	175 (1.950)	12 (0.150) +GAGAGGAGGATTACAAA	7/222	NT	9.4%	coding (1/1848 nt)	mutL	methyl‑directed mismatch repair protein

Only 100 of 115 total aligned reads displayed.

TTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCA  >  NC_000913/565959‑566236

 ttcTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTAACCTGGACAGTATGCAGCGGAGACTGAAGCGCAGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATTCGTc                                                                                                                                           >  1:585642/1‑140 (MQ=255)

          agagTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCAtt                                                                                                                                  <  1:208809/140‑1 (MQ=255)

            agTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGc                                                                                                                                <  1:262055/140‑1 (MQ=255)

            agTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGc                                                                                                                                <  1:262017/140‑1 (MQ=255)

              tGACATTTGCTTTCCTCTGTTAGGCCCTCACCCGCGCTCACCTGGACAGTATGCAGCGGAGCCTGAAGCGCCGCAATGCAGGGGTGCCGTGTGGTGAGGTACCCGGATATGATCGTGTGGATGCGTCTTCGCGATTGcgc                                                                                                                              >  2:1369526/1‑138 (MQ=255)

                  aTTGTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCa                                                                                                                          <  1:728435/140‑1 (MQ=255)

                   ttttCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCaa                                                                                                                         >  2:178730/1‑140 (MQ=255)

                    gctgtttttcactagttctttgactaccgacgcaggtcgctcgaccacctcacctgcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCaaa                                                                                                                        <  2:1239356‑M1/21‑1 (MQ=255)

                        ttttccactagttctttgactaccgacgcaggtcgctcgaccacctcacctgcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCAAATACa                                                                                                                    >  1:4142‑M1/116‑140 (MQ=255)

                        tttcCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa                                                                                                                    <  1:1654056/140‑1 (MQ=255)

                            ctctGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAAc                                                                                                                <  1:21166/140‑1 (MQ=255)

                               tGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCaa                                                                                                             >  1:1148778/1‑140 (MQ=255)

                                         tCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAg                                                                                                   >  2:979092/1‑140 (MQ=255)

                                         tCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAg                                                                                                   >  2:1362624/1‑140 (MQ=255)

                                           aCCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg                                                                                                 >  1:478968/1‑140 (MQ=255)

                                                cgcTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg                                                                                            >  1:629863/1‑140 (MQ=255)

                                                cgcTCACCTGGACAGGATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTCTCGGGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg                                                                                            >  1:628459/1‑140 (MQ=255)

                                                         ggACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttttt                                                                                   <  2:249544/140‑1 (MQ=255)

                                                         ggACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttttt                                                                                   <  2:604206/140‑1 (MQ=255)

                                                             aGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGa                                                                               >  2:1320088/1‑140 (MQ=255)

                                                               taagCAGCGGAGACTGTAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCAAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAATTTTTCGATg                                                                             >  2:1236167/4‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGGTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGTTGCGTCATCGCCATTGCTCCCAAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCTTTTTTTCGATg                                                                             >  2:635442/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  1:1651416/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  2:1375344/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  2:1487860/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             <  2:777893/140‑1 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  2:1572512/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAATTTTACGATg                                                                             >  2:766972/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGGGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  2:95712/1‑140 (MQ=255)

                                                               tATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCGTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg                                                                             >  2:997755/1‑140 (MQ=255)

                                                               tATGAAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTAACGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATATTTTCGATg                                                                             >  2:1339978/1‑140 (MQ=255)

                                                                 tGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGaa                                                                           <  1:921170/140‑1 (MQ=255)

                                                                 tGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGaa                                                                           >  2:918864/1‑140 (MQ=255)

                                                                 cacctcacctgcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGaa                                                                           <  2:11352‑M1/66‑1 (MQ=255)

                                                                 cacctcacctgcggcaatctggttcgccagttgtggcggtaagacctgaagtggcattttgtaagccgcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGaa                                                                           <  2:392891‑M1/66‑1 (MQ=255)

                                                                    ctcacctgcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCACATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTc                                                                        >  1:1514120‑M1/72‑140 (MQ=255)

                                                                    aGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTc                                                                        >  2:1105089/1‑140 (MQ=255)

                                                                    aGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTc                                                                        <  1:235907/140‑1 (MQ=255)

                                                                    aGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTc                                                                        >  2:9571/1‑140 (MQ=255)

                                                                    aGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTATGTCGATGAACTc                                                                        >  2:850540/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGTTACCCGGAAATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCTATTTCAGCCAGGGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  1:1615379/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  1:316661/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:488338/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:1514449/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:551560/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:1514428/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:1512426/1‑140 (MQ=255)

                                                                         agaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCa                                                                   >  2:1310150/1‑140 (MQ=255)

                                                                           gcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCacg                                                                 <  1:469131‑M1/76‑2 (MQ=255)

                                                                           gcggcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGACATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCacg                                                                 >  1:911380‑M1/65‑139 (MQ=255)

                                                                           aCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCAcc                                                                 >  1:402894/1‑140 (MQ=255)

                                                                              gcaatctggttcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCGCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGAtc                                                              <  2:379417‑M1/79‑1 (MQ=255)

                                                                               aaGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAtct                                                             >  2:1368569/1‑140 (MQ=255)

                                                                                aGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCAACGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAtctc                                                            >  2:1546416/1‑140 (MQ=255)

                                                                                     cgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCaa                                                       >  2:376815/1‑140 (MQ=255)

                                                                                        tcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                    >  1:1352595‑M1/52‑140 (MQ=255)

                                                                                        tcgccagttgtggcggtaagacctgaattggcattttgtaatcctcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                    >  1:168804‑M1/52‑140 (MQ=255)

                                                                                        attGCAGGCTTGCCGTGTTGTGAGGTACCAGGATATTATCGTGAGGATGCGTCATCGCCATTGATACCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCTTTTTTTTGATGATATCAGGCACCATCTCGTCAAAAc                                                    <  1:1612041/138‑1 (MQ=255)

                                                                                        aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                    <  1:1473025/140‑1 (MQ=255)

                                                                                        aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                    <  1:1430127/140‑1 (MQ=255)

                                                                                        aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                    <  1:1427176/140‑1 (MQ=255)

                                                                                          tGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTc                                                  <  2:470215/140‑1 (MQ=255)

                                                                                          tGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTc                                                  >  2:691982/1‑140 (MQ=255)

                                                                                             aGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                               <  1:1444198/140‑1 (MQ=255)

                                                                                             aGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                               <  1:1081342/140‑1 (MQ=255)

                                                                                             aGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                               <  1:551306/140‑1 (MQ=255)

                                                                                                 ttGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                           <  2:547348/140‑1 (MQ=255)

                                                                                                 ttGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                           <  2:1484373/140‑1 (MQ=255)

                                                                                                    ccGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACt                                        >  1:985466/1‑140 (MQ=255)

                                                                                                    acGTGTTGTGAGGTACCCGGATATTATCGTGAGGAAGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCTTCCATTTTTTCTATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACt                                        >  2:100841/2‑140 (MQ=255)

                                                                                                               ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGc                             <  1:1382886/140‑1 (MQ=255)

                                                                                                               ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGc                             <  1:1263485/140‑1 (MQ=255)

                                                                                                                gTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCt                            <  1:1661798/140‑1 (MQ=255)

                                                                                                                   cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCaa                         >  2:917804/1‑140 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACACAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:535304/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGCTGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:534572/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  2:730163/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  2:537221/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:1109366/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  2:1232914/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:1128187/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:1523905/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:311770/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:620493/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  2:1092247/140‑1 (MQ=255)

                                                                                                                      ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCATCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                      <  1:850540/140‑1 (MQ=255)

                                                                                                                      gcatatTATCGTGAGGATGCGTCAACGCCATTGCTCCCCAAAAACAAAACCAATTTCAGCCAGTGCCTCGTCCATATTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACATTTCATTCCGCTCAATCa                      <  2:253996/138‑1 (MQ=255)

                                                                                                                           ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACa                 <  1:304180/140‑1 (MQ=255)

                                                                                                                           ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACa                 <  1:1564855/140‑1 (MQ=255)

                                                                                                                           ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACa                 <  1:118237/140‑1 (MQ=255)

                                                                                                                                atcctcctctcTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATg            >  1:1239356‑M1/12‑140 (MQ=255)

                                                                                                                                 tGAGGATGCGTCATCGCCATTGCTCCCCCAATACAAAACCAATTTCCGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGc           <  2:775706/140‑1 (MQ=255)

                                                                                                                                 tGAGGATGCGTCATCGCCATTGCTCCCCAACTACACAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGc           <  2:777146/140‑1 (MQ=255)

                                                                                                                                 tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGc           >  1:315306/1‑140 (MQ=255)

                                                                                                                                 tGAGGATGCGTCATCGCCATTGCTACCCAAATACAAAACCAATTGCAGCCAGTGCCTCGTCCATTTTTACGATGAACACCGGCACCCTCTCGTCAAAACTCGCCATGTACTTATCAATCCGCTCAATCACGACAAAAtcc           >  1:22808/1‑138 (MQ=255)

                                                                                                                                      aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATATTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGcc      <  1:453858/140‑1 (MQ=255)

                                                                                                                                          gTCATCGCCATTGCTCCCCAACTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa  <  1:1502804/140‑1 (MQ=255)

                                                                                                                                          gTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa  <  1:918864/140‑1 (MQ=255)

                                                                                                                                          cTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa  >  1:435251‑M1/2‑140 (MQ=255)

                                                                                                                                          cTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa  >  1:1385591‑M1/2‑140 (MQ=255)

TTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCA  >  NC_000913/565959‑566236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.