| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 281,965 | A→T | 7.4% | W7R (TGG→AGG) | yagA ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 281,965 | 0 | A | T | 7.4% | 783.0 / 4.8 | 405 | W7R (TGG→AGG) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (161/178); new base T (2/44); total (164/241) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 423 total aligned reads displayed.
TGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCT > NC_000913/281826‑282104 | tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGTACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 2:1580249/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 2:1320667/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 2:1537976/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 2:905898/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 1:512633/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 2:359407/140‑1 (MQ=255)tGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 1:777328/140‑1 (MQ=255)agAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCa < 1:279789/139‑1 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 1:714745/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 2:629683/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 1:599399/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 2:520995/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 2:1168966/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 1:1611575/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 1:377629/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATa > 1:1546634/1‑140 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCCCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGGAAAGACATGGGATCGCTCGCTTCCCAGGGCATa > 2:218565/1‑140 (MQ=255) gcgcTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATaa > 1:253474/1‑140 (MQ=255) cgcTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGACCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCCTAAg > 1:694617/1‑140 (MQ=255) tGGTGCCACTTGTAGCCGGTGGCTGGTGAAAGGCCGAAGCGACGGCAGAGGGAACGGCTGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACTTGGTTTCTCTCGCATCCCTGGGCTTAAGCGa < 2:263192/140‑1 (MQ=255) tGGAGCCAATTGTAGCCGGTGGCTGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTACGCCCCGTCCTGCGAGGCTAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGa < 2:728544/140‑1 (MQ=255) gAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACt > 1:1318237/1‑140 (MQ=255) gAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACt > 1:622838/1‑140 (MQ=255) aCTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTCTCTCTCGCATCCCAGGGCATAAGCGACTCCATa > 2:697944/1‑140 (MQ=255) tgCCGGTGGCAGGTGAATTGCCGAAGCGACGTCAGAGGTAACTGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCATTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACggg < 2:799991/139‑1 (MQ=255) cgCCGGTGGCTGGTTAAATGCCGAAGGGACGGCAGTGGGAAGGTATGTTCGCCCCGTCCTGCGAGGCGAACAAAAAAACCACAGTACGTAATGAATTGGTATCTCTCGAATCCCAGGGATTAAGCGACTCCATAAACggg < 1:1165971/139‑1 (MQ=255) aGCCGGTGGCAGGTCAAAAGCCGAAGCGAGCGCAGAGGCAACGTATGTTCGCCCCGACCTGCCAGGCCAACAAAACAAACTAAGAACGAAAAGACATGGTATCACACCCAACCCAGGCCATAAGCGACTCCATAAACggg < 2:881689/140‑1 (MQ=255) ccGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACggggt > 2:1396094/1‑138 (MQ=255) tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAAGGGTTGTTCGCCCCGTCCTGCGTGGCGAACAAAACAAACTCAGTACTAAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa < 2:412781/140‑1 (MQ=255) tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa > 1:740569/1‑140 (MQ=255) tGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGGATCGCGCGCATCCCAGGGCCTAAGCGACGCCCTCAACgggggcgga > 2:1078571/1‑134 (MQ=255) tggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCTAACAAAACAAACTCAGTACTTAATGACAGGTTATCTCTCGTATCCCTGGGCATAAGCGACTCCATAAACGGGTTCTTATGcc < 1:1402704/139‑1 (MQ=255) cggTGAAATGCCGACGCGCCGGCAGCGGGAACGGCTGTTCGCCCCGCCCTGCGAGGCTAACAAACCAAACTCCGTACGTAAGGACTTGGTATCTCTCGCATCCCCGGGCAAAAGCGACTCCATAAACGGGTTCTTATGcc < 1:919997/139‑1 (MQ=255) aGGTTAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCTGGGCATAAGCGACTCCATAAACGGGTTCTTATGcc < 2:1041633/140‑1 (MQ=255) aGGTGAAATGCCGACGCGCCGGCTGAGGGAACGGATGTACGCCCCGTCCTGCGAGGCTAAAAAAACAAACTCAGTACTTAATGACATGGTATCTCTCGCATCCCAGGGAATAAGCGACTCCATAAACGGGTTCTTATGcc < 1:239088/140‑1 (MQ=255) gttaattGCCGAAGCGACGGCAGTGGTAACGGATGTTCGCCCCGTCCTGCGTGGCTAAAAAAACAAACACAGTACTTAATGAAATGGTATCTCTCGCATCCCAGGTAATACGCGACTCCATAAACGGGTTCTTATGCCtt < 1:303307/134‑1 (MQ=255) gttaattGCCGAAGCGACGGATGTGGGAACGGATTTTCGCCCCTTCCTGCGCGGCCAACAAACCAAACTCGTTACTTAATGACATGTTATCTCTCGCAACCCTGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCtt < 1:65470/134‑1 (MQ=255) gTGAAATGCCGAAGCGACGGCAGAGGGACCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCAGAAGCGACTCCAGAAACGGGGTCTTATGccgt > 2:652761/1‑138 (MQ=255) gTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAAAAAAACAAACTCATTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCtt < 2:508988/140‑1 (MQ=255) gTGAAAAGCACAAGCGACGGCAGAGGGAACGGATGATCGCCCCGACCTGCGAGGCGAACAAATCAAACTCTCTCCTTAATTACATGGTATCTCTCCCATCCCAGGGCAAAAGCGACTCCATAAACGGGTTCTTATGCCtt < 2:1691322/140‑1 (MQ=255) ttccGAAGCGAGGGCTGAGGGAACGTATGTTCGCCCCGACCTGCGAGGCTAACAAAACAACATCAGTACGTAATGACATGTTAACACACGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTATTATGACTTAGTTGt < 2:249986/138‑1 (MQ=255) aaGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAgtg > 2:314048/1‑140 (MQ=255) gCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGACCGTAATGACATGTTATCTCGCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTc < 2:1628876/140‑1 (MQ=255) cGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTAcc < 2:1476133/140‑1 (MQ=255) ggCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCTAAAAAAACAAACACAGTACGTAATGACATGGTATCTCTCGCAGCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCa < 1:681064/140‑1 (MQ=255) agagGTAACGGATGTACGCCCCGTCCTGCGAGGCGAACAAACAAAACTCAGTACGTAATGAAATGGTATCACTCGCATCCCAGGGCATAAGCGACTCCTTACCCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGt < 2:1245625/140‑1 (MQ=255) agGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATCAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTTCCATGTcc > 2:775721/1‑140 (MQ=255) aaCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGa > 1:1120115/1‑140 (MQ=255) aCGGATTTTCGCCCCGTCCTGCGAGGCTAACAAAACAAACTCAGTAGGTACTGAAATGGTTACTCTCGCATCCCTGGGCAAAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa < 1:1225628/140‑1 (MQ=255) aCGGATGTTCGCCCGGTCCTGCGAGGCTAACAAAAAAAACACTGTACGTATTGACATGGTATCTCTCGCAACCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa < 1:450831/140‑1 (MQ=255) aCGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATTACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa < 2:1495654/140‑1 (MQ=255) cGGTTGTGCGCCCCGTCCTGCGTGGCTAAAAAAACAAACACATTACTTAATCACATGTTATCTCACCCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAAc < 1:989788/140‑1 (MQ=255) cGGATGTTCGCCCCGACCTGCGAGGCTAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAAc < 1:576286/140‑1 (MQ=255) gATTTTCGCCCCGTCCTGCGTGGCTAACAAAACAAACTCAGTACTTAATGAAATGGTATCTCTCGCATCCCAGGGCATACGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACaa < 1:151642/140‑1 (MQ=255) gATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACaa < 2:1546634/140‑1 (MQ=255) tCGCCCCGTCCTGCGAGGCTAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCTGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGtt < 2:101996/140‑1 (MQ=255) tCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGtt < 1:324840/140‑1 (MQ=255) ccttCCTGCGAGGCTAAAAAAACAAACTCATTACTTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa < 2:403928/137‑1 (MQ=255) ccGTCCTGCGAGGCGAACACACCAAACTCAGAACTTAATGACATGTTATCTCTCGCACCCCAGGGCAAAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACtc < 1:955215/140‑2 (MQ=255) ccGTCCTGCGAGGCGAACAACCCCAACTCAGTACGTAATTACTTGGTTTCACTCGCATCCCCGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa < 2:350786/140‑1 (MQ=255) ccGTCCTGCGAGGCGAACAAAACAACCTCAGTACGTAATGACATGGTATCTCTCGCAACCCAGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa < 1:1055385/140‑1 (MQ=255) ccGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGTTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTa < 1:1454728/140‑1 (MQ=255) gTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATg > 2:1294556/1‑140 (MQ=255) tCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGt > 2:827302/1‑140 (MQ=255) tCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGt > 1:1688029/1‑140 (MQ=255) cGAGGCTAACAAACCAAACACTTTACTTAATTACAGGTTATCTCTCGAATCCCCGGGCTTAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCg < 2:191164/140‑1 (MQ=255) tggCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGa < 2:89108/139‑1 (MQ=255) tggCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGa < 2:594267/139‑1 (MQ=255) cggCGCACAAAACCACCTCAGTCCGCACTGCCCTGGTCTCTCTCGCAGCCCTGGGCATACGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGa < 1:1078571/139‑1 (MQ=255) cGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCg > 2:754020/1‑140 (MQ=255) cGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCg > 2:549768/1‑140 (MQ=255) cGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCGTAGTTGTCAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCg > 2:1062390/1‑140 (MQ=255) aacaaaccaaCCTCCGTACGTAATGACTGGGTATCTCTCGCATCCCAGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTa < 1:533751/140‑1 (MQ=255) aacaaaacaaCCTCATTACGTACGGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTa < 1:1001681/140‑1 (MQ=255) aacaaaaaaaACTCAGTACGTAATGACATGGTATCTCTCGCATCCCTGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTa < 2:225037/140‑1 (MQ=255) caaaacaaaCTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTaca < 2:456155/140‑1 (MQ=255) aaacaaacTCAGTACGTAATGACATGGTATCTCTCGCATCCCTGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACAcc < 1:841534/140‑1 (MQ=255) caaacTCAGTACGTAATGACTTGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCa < 1:1585579/140‑1 (MQ=255) caaacTCAGTACGTAATGACATGGTATCTCTCGCATCCCTGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCa < 1:422172/140‑1 (MQ=255) caaacCCCGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCa < 1:1434615/140‑1 (MQ=255) aacTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCaaa < 2:868242/140‑1 (MQ=255) tACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGgaga < 1:1345866/140‑1 (MQ=255) cccGTAATCCCATGGAAGCACCCGCATCCCCGGGCAAACGCGACTCCAAACACGCGATCTAATGCCTTAGTTGAAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGgaga < 2:1257860/138‑1 (MQ=255) aaTGACTTGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGa < 1:163075/140‑1 (MQ=255) aaTGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGa > 1:196856/1‑140 (MQ=255) aaTGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGa < 2:1134461/140‑1 (MQ=255) aaTGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCGTATGCGTTAGTTGTAAGTGTCTACCATGTCCACGAACAAGTGGTCTCTTTGTCCCCGGACCGGACACCCCAAGGGGGCGTGGGGa > 2:1217551/1‑140 (MQ=255) cagggTATCTCTCGAATCCCTGGGAATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa < 1:1258126/137‑1 (MQ=255) cATGGTCTCTCTGGCATCCCAGGGCATTAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa < 2:302649/140‑1 (MQ=255) cATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTACTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGAGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCa > 2:393412/1‑140 (MQ=255) tGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCAcc > 1:1386530/1‑140 (MQ=255) ggTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCg > 2:1087065/1‑140 (MQ=255) ggTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCg > 2:1620299/1‑140 (MQ=255) ggTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCg > 2:1366806/1‑140 (MQ=255) tctctcGCAGCCCAGGGCATAAGCGACTCCATAACCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGcc < 1:1499061/140‑1 (MQ=255) ctcGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATc > 1:1111232/1‑140 (MQ=255) gCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCttt > 2:962160/1‑140 (MQ=255) cATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCtttt < 2:582663/140‑1 (MQ=255) cATCCCAGGGCATAAGCGACTCCATAAACGGATTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTa > 1:899649/1‑100 (MQ=255) aTCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTc > 2:1402239/1‑140 (MQ=255) | TGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCT > NC_000913/281826‑282104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |