| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4009087 = | 65 (1.090) | 4 (0.070) | 4/272 | NT | 5.7% | intergenic (‑28/‑83) | rhtB/pldB | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump/lysophospholipase L2 |
| ? | NC_000913 | 4009121 = | 68 (1.160) | intergenic (‑62/‑49) | rhtB/pldB | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump/lysophospholipase L2 | |||||
GCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4009236‑4009087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTGGGAAACAAGAGAAAACGCGTTTGCTGCTTTTACCATGGGACCGCTGACTGATTTCTGGCGTCAGCGTGATGAAGCA > NC_000913/4009121‑4009268 gggggCCCATGGTAAAAGCAGCAAACCCGTGTTCTCTAGGTTCCCAGGCTTCTAGCTGCTGAAACATCGGGGAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGC < 2:462123/144‑1GCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGC < 1:137355/149‑1 AAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTTGCGTTTTGTGGGAGGCACGCGAAAAAATACGTTTTTACGTGGTTTTATAGGCAGGTTAACCGATGTTTCAGCA > 2:76393/1‑149 TGACACAACGCTGCGACAGTAGCGTATTGTGGCAGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTG > 1:312903/1‑106 TGACACAACGCTGCGACAGTAGCGTATTGTGGCAGGCACGCTAAAAAAAACGATTTAACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTG < 2:312903/106‑1 ACAACGCTGCGACAGTAGCG‑‑TTGTGTCAGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTGGGAAACAAGAGAAAACGCGTTTGCTGCTTTTACCATGGGACCGCTGACT > 1:811729/1‑149 CAGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTGGGAAACAAGAGAAAACGCGTTTGCTGCTTTTACCATGGGACCGCTGACTGATTTCTGGCGTCAGCGTGATGAAGC > 1:4336/1‑149 AGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTGGGAAACAAGAGAAAACGCGTTTGCTGCTTTTACCATGGGACCGCTGACTGATTTCTGGCGTCAGCGTGATGAAGCA > 2:144625/1‑149 GCGGTCCCATGGTAAAAGCAGCAAACGCGTTTTCTCTTGTTTCCCAGTCTTTTTGCTGCTGAAACATCGGGTAATCTGCCTCTTAAACCACGTAAAATCGTTTTTTTTAGCGTGCCTGACACAACGCTGCGACAGTAGCGTATTGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4009236‑4009087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGCACGCTAAAAAAAACGATTTTACGTGGTTTAAGAGGCAGATTACCCGATGTTTCAGCAGCAAAAAGACTGGGAAACAAGAGAAAACGCGTTTGCTGCTTTTACCATGGGACCGCTGACTGATTTCTGGCGTCAGCGTGATGAAGCA > NC_000913/4009121‑4009268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |