New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4124311	68 (1.150)	5 (0.090)	3/268	NT	7.6%	coding (146/1026 nt)	cytR	Anti‑activator for CytR‑CRP nucleoside utilization regulon
	?	NC_000913	= 4124344	56 (0.970)					coding (113/1026 nt)	cytR	Anti‑activator for CytR‑CRP nucleoside utilization regulon

CAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4124160‑4124311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATTTACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCCTTCTTTAGCGAAATTATTC  <  NC_000913/4124344‑4124198                                                                                                                                                                                                                                                                                                             CAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTATAGAAGGGATCGCAGATATCCGGGACAATCACGAGAATGGTGCGGGATTCATTCCGCTTGACGTTGCGCCCCATAGGCTGCGGTAACTAACCCACTT                                                                                                                                                        >  1:887482/1‑149   GATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCC                                                                                                                                                      >  1:659943/1‑149    ATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCC                                                                                                                                                     >  1:830994/1‑149                                ATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCAGGCCACCCGTAATCGGGTTGAAAAAGC                                                                                                                         >  2:60531/1‑149                                ATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGGAAATAACCCACTTCCCAGGCCACCCGGAATCGGGTGGAAAAAGC                                                                                                                         >  2:63837/1‑149                                             TTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTG                                                                                                            <  1:391571/149‑1                                              tgCGCTAAAGACGGGATCGCAGATATCCGGGACAATCACCAGCCTGGGGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATACCCCACTTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGG                                                                                                           <  1:63837/147‑1                                              TTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGG                                                                                                           <  1:60531/149‑1                                                                                                                                                     TCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGTAGTGGGTTATTTACCGCAGACTCTGGGGCGCTACGTCCAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCGTTCTTTAGCGAAATTAT    >  1:751392/1‑149                                                                                                                                                     TCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATTTACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCCTTCTTTAGCGAAATTAT    >  2:659943/1‑149                                                                                                                                                      CCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATTTACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGTATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCCTTCTTTAGCGAAATTATT   >  1:346268/1‑149                                                                                                                                                       CCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATTTACCGCAGCCTATGGGGCGCACCGTCAAGCGTATTGAATCCCGCACCATTCTGGTGTTTGTCCCGGATATCTGCGATCCCTTCTTTAGCGAAGTTATTg  >  1:1009128/1‑148                                                                                                                                                                                                                                                                                                             CAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4124160‑4124311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATTTACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCCTTCTTTAGCGAAATTATTC  <  NC_000913/4124344‑4124198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.