New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	70646 =	50 (0.840)	4 (0.070)	4/268	NT	7.8%	coding (260/879 nt)	araC	ara regulon transcriptional activator; autorepressor
	?	NC_000913	70694 =	46 (0.800)					coding (308/879 nt)	araC	ara regulon transcriptional activator; autorepressor

GACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCA  >  NC_000913/70499‑70793                                                                                                                                                    |                                                                                                                                                    ccagcagctccgaatagcgcccttccccttgcccggcgttaatgatttgcccaaacaggtcgctgaaatgcggctggtgcgcttcatccgggcgaaagaaacccgtattggcaaatattgacggccagttaagccattcatgccagtAg                                                                                                                                                    <  1:777855‑M1/2‑1 (MQ=255) ccagcagctccgaatagcgcccttccccttgcccggcgttaatgatttgcccaaacaggtcgctgaaatgcggctggtgcgcttcatccgggcgaaagaaacccgtattggcaaatattgacggccagttaagccattcatgccagtAg                                                                                                                                                    <  1:388175‑M1/2‑1 (MQ=255)      cTGGGAATGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTcg                                                                                                                                               >  1:253018/1‑149 (MQ=255)       tGGGAATGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGCACGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGcgcgg                                                                                                                                              >  1:488118/1‑148 (MQ=255)           aaTGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAAt                                                                                                                                          <  2:266643/149‑1 (MQ=255)            aTGAAAGGGTATATACTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGGCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGGCATCCGGAGGCTCGCGAATg                                                                                                                                         <  2:872396/149‑1 (MQ=255)              gAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGCGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGt                                                                                                                                       <  1:100246/149‑1 (MQ=255)               aaaGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTa                                                                                                                                      >  1:116190/1‑149 (MQ=255)                 aGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGGGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATc                                                                                                                                    <  2:500595/149‑1 (MQ=255)                   gTTATATTCTCAATCTCACCATTCGCGGTCAGGAGGTGGTGAAAAATCAGGTACGAAAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCAc                                                                                                                                  >  2:334127/1‑149 (MQ=255)                        atTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGCGATTCATCACTACGGTCGTCATCCGGAGGCTAGCGAATGGTATCTCCAGTg                                                                                                                             >  2:764115/1‑149 (MQ=255)                         ttCTCAATCTCACCATTCGCGGTCCGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGCCCGGGGGCTATTTTGCTGTTCCGGCGAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGGATCACCAGTgg                                                                                                                            >  2:773357/1‑149 (MQ=255)                         ttCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTgg                                                                                                                            <  1:380079/149‑1 (MQ=255)                          tctcAATCTCCCCATTCGCGGTCAGGGGGGGGTGAAAAATCAGGGACGAGAATTAGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTggg                                                                                                                           <  2:119739/149‑1 (MQ=255)                          tctcAATCTCACCATTCGCGGTCAGGTGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACAGGGTTATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACTGTCGTAATCCGGAGGCTCGCGAATGGTATCACCAGTggt                                                                                                                           >  2:70956/1‑148 (MQ=255)                               aTCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTAc                                                                                                                      <  1:914219/149‑1 (MQ=255)                                      cATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTc                                                                                                               >  2:75155/1‑149 (MQ=255)                                           gcgGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCcgcgc                                                                                                          <  2:377922/149‑1 (MQ=255)                                             ggTCAGGGGGTGGGGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGATTGGTATCACCAGTGGGTTTACTTTCGTCCgcgcgc                                                                                                        <  2:636618/149‑1 (MQ=255)                                               ttgcccaaagagggcgctgaaatgcggctggggcgcttcatccgggcgaaagaaacccgtattggcaaatattgacggccagttaagccattcatgccagtAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCt                                                                                                      >  2:496880‑M1/102‑149 (MQ=255)                                                tgcccaaacaggtcgctgaaatgcggctggtgcgcttcatccgggcgaaagaaacccgtattggcaaatattgacggccagttaagccattcatgccagtAGGCTCGCGAATGGTATCACCAGTGGGATTACTTTCGTCCGCGCGCCTa                                                                                                     >  1:413982‑M1/101‑149 (MQ=255)                                                 aGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTAc                                                                                                    >  1:467138/1‑149 (MQ=255)                                                    caaacaggtcgctgaaatgcggccggtgcgcttcatccgggcgaaagaaacccgtattggcaaatatagccggccacttaagccattcatgccagtAGGCTCGCGAATGGTATCACCAGTGGGTTCACTTTCGTCCGCGCGCCTACTgg                                                                                                 >  1:415692‑M1/97‑149 (MQ=255)                                                       gggtgAAAAATCAGGGACGCGAATGTGTCTGCCGCCCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGGCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCAt                                                                                              <  1:946897/148‑1 (MQ=255)                                                         gtgAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGa                                                                                            >  2:957378/1‑149 (MQ=255)                                                            aaaaaTCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATg                                                                                         <  2:728110/149‑1 (MQ=255)                                                             cgctgaaatgcggctggtgcgcttcatccgggcgaaagaaacccgtattggcaaatattgacggccagttaagccattcatgccagtAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATgg                                                                                        >  1:412280‑M1/88‑149 (MQ=255)                                                              aaaTCAGGGCCCACACTTGGTCTGCCGACCGGGTGATATTTGCCTGTTCCCGCCAGGAGAGAGTCATCCCTACGGTCGGCAACCGGAGGCTCGCGAATGGTATCACCAGGGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGc                                                                                       <  2:288200/149‑1 (MQ=255)                                                              aaaTCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGc                                                                                       >  1:512982/1‑149 (MQ=255)                                                                  cAGGGACGAGAATTTGTCTGCCCACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCAACAGTGGGTTTACTTTCGTCCGAGCGCCTACTGGCATGAATGGCTTaa                                                                                   <  2:155712/149‑1 (MQ=255)                                                                      gACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTgg                                                                               <  1:273925/149‑1 (MQ=255)                                                                       aCGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTAAGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGc                                                                              >  2:303646/1‑149 (MQ=255)                                                                           gaATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTc                                                                          >  2:388175/1‑149 (MQ=255)                                                                               ttGTCTGCCGACCGGGTGATATTTTGCTGTTGCCGCCAGGAGAGCGTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTTCTTTCGTCCGCGCGCCGACTGGCATGAATGGCTTAACTGGCCGTCAatt                                                                      >  1:278075/1‑148 (MQ=255)                                                                                    tGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCATTATTTgg                                                                 >  1:497485/1‑148 (MQ=255)                                                                                     gCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCCCCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGATTGGCTTAACTGGCCGTCAATATTTTcc                                                                >  1:470889/1‑149 (MQ=255)                                                                                      ccGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTGATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCa                                                               <  1:764115/149‑1 (MQ=255)                                                                                      ccGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCa                                                               <  2:116190/149‑1 (MQ=255)                                                                                             ggTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACTGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTAAACTGGCAGTCAATATTTGCCATTACggg                                                        >  1:96213/1‑149 (MQ=255)                                                                                                 atatTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGTGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGtttc                                                    <  2:253018/149‑1 (MQ=255)                                                                                                   atTTTGCTGTTCCCGCCAGGAGGGATTCAACACTACGGTCGTCATCCGGAGGCTCGCGAATGGAATAACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGAATGAATTGATAAACTGGCCGTCAATATTTGCCAAAAAGGTgttctt                                                  >  2:269178/1‑149 (MQ=255)                                                                                                    ttttGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTTTCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCGTAACTGGCCGTCAATATTTGCCAATCCGGGtttcttt                                                 >  1:981041/1‑149 (MQ=255)                                                                                                    ttttGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTTCTGGCATAAATGCCTTACATGGCCGTCAATATTTGCCAATACGGGtttcttt                                                 >  2:52436/1‑149 (MQ=255)                                                                                                     tttGCTTTTCCGGCCAGGCGTGATTAATCACTACGTGCCTCATCCGGAGGCTCGCGAATGGTTTCACCAGGGGGTTTACTTTCTTGCGCTCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGattcttgc                                                <  2:927033/149‑3 (MQ=255)                                                                                                     tttGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGtttctttc                                                <  2:467138/149‑1 (MQ=255)                                                                                                      ttGCTGTTCCCACCAGGAGAGATTCATAACTACGGTCGTCATCCGGAGTCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCGACGGGCATGTATGGCTTAACTGGCCGTCAAGATTTGCCAATACGGGTTTCTTTCg                                               >  1:688956/1‑149 (MQ=255)                                                                                                          tGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCg                                           >  2:79615/1‑149 (MQ=255)                                                                                                              cccGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATg                                       <  1:523713/149‑1 (MQ=255)                                                                                                                cGCCAGGCGAGAATCATCACTACGGGCGTCATCCGGAGGCTCGCGAATGGTCTCACCAGTGTGAGTACATTCGTCCGCGAGCCGACTTGCATGAGTGGCTTACCTGGCCTTAAATATTTGCCAATCCGGGCGTCTTTCGCCCGGATGaa                                     <  2:685102/149‑1 (MQ=255)                                                                                                                    aGGAGAGATGCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAgcgc                                 <  1:770096/149‑1 (MQ=255)                                                                                                                           agtcatcaCTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTGACTTTCGTCCGCGCGCCGACTGGCATGACGGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTGCTTTCGCCCGGATGAAGCGCCCCAGcc                          <  1:159998/147‑1 (MQ=255)                                                                                                                             tcatcaCTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGc                        >  1:555011/1‑149 (MQ=255)                                                                                                                                        gtcgtcATCCGGAGGCTCGCGAATGGTATCACCAGGGGGTTTACTTTCGTCCGCGCGCCTACGGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGAc             <  1:70956/149‑1 (MQ=255)                                                                                                                                            tcATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGCCCTGt         >  2:364864/1‑149 (MQ=255)                                                                                                                                             cATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGtt        <  1:334127/149‑1 (MQ=255)                                                                                                                                              aTCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCGTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCACCCGCATTTCAGCGACCTGttt       <  2:512982/149‑1 (MQ=255)                                                                                                                                               tCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTg      <  1:75155/149‑1 (MQ=255)                                                                                                                                                   gAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCa  >  2:271385/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GACCGCTGGGAATGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACCAGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCA  >  NC_000913/70499‑70793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.