| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2019533 = | 36 (0.610) | 3 (0.050) | 3/268 | NT | 7.7% | intergenic (+20/‑85) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein |
| ? | NC_000913 | 2019576 = | 37 (0.640) | intergenic (+63/‑42) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein | |||||
GCAACAGCAAAGCCAACGCACAGCAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCGTCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGATTCTGGTATTCA > NC_000913/2019387‑2019681 | cagtcgcggtaacctgcgcgggcacaggccgcgagggtaatgaataccagaagcgggatcctaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcatcctgtgtcgctactgcttatcggctaattATc > 2:772917‑M1/147‑149 (MQ=255)cagtagctgtaacctgcgctggcacaggccgcgagggtaatgaataccagaatcgggatccaaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcttcctgtgtcgctactgcttatcggctaattATc > 2:142644‑M1/147‑149 (MQ=255)cagtagctgtaacctgcgctggcacaggccgcgagggtaatgaataccagaatcgggatccaaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcttcctgtctcgctactgcttatcggctaattATc < 2:897709‑M1/3‑1 (MQ=255) gcaaAGCCAACGCACAGCAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTc > 1:1016585/1‑149 (MQ=255) gcaaAGCCAACCCACAGCAAACCATGAACCTCTGGCGGGGGATGACGACGATACGCGTCCGGTTCCCCTCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGCGGTAGCACCGTAATCCGCGTc > 1:734985/1‑149 (MQ=255) aGCCAACGCACAGCAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCtttt < 2:53447/149‑1 (MQ=255) gCACAGCAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTACCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTACGCCAAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCt < 1:269363/149‑1 (MQ=255) gCAAACCATGAACCTCTGGCTGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTttgtt < 1:254920/149‑1 (MQ=255) cAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTACCGTCAGAGGTAGAACCGTAATCAGCGTATTTTCCCCGCTttgttg > 2:117914/1‑149 (MQ=255) aCCATGAACCTCTGGCGGGGGAAGCCGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGGGGAACAGGCAACAGCGGCGGTGTTATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCTCTTTGATgcgc > 1:603679/1‑149 (MQ=255) aCCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTgcgc > 1:812670/1‑149 (MQ=255) ctGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAg < 1:423535/149‑1 (MQ=255) atgaataccagaatcgggatccaaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcttcctgtgtcgctactgcttatcggctaattATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGa < 1:599591‑M1/42‑1 (MQ=255) tgaataccagaatcgggatccaaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcttcctgtgtcgctactgcttatcggctaattATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGAt > 2:599591‑M1/107‑149 (MQ=255) gaataccagaatcgggatccaaagcgatcgcttgcttttcttgcttatcgcgtaatcagtcatgtgttgcggtcttcctgtgtcgccactgcttatcggctaattATCCGCGTCTTTTCCCCGCGTTGTTGCGCTCAAGACGCAGGATa > 1:970351‑M1/106‑149 (MQ=255) gggggACGACGACGATACGCTTCCGGTTCCCATCTCTATACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTATCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATaa < 1:320998/149‑1 (MQ=255) ggggTAGCCGACGATACGCTTCCGGTTCGCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAAt < 2:171850/149‑1 (MQ=255) aaGACGACGATACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGc < 2:812670/149‑1 (MQ=255) gacgacGATACGCTTCCGGGTCCCATCTCTTTACAAGGGCGAGTAACAGGCAACAGCGGCGGTGATAATTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCGACGATTTGTTGAGCTCAAGACGCAGTATAATTAGcag > 1:492564/1‑147 (MQ=255) cgacgaTACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGAt < 1:321661/149‑1 (MQ=255) gacgaTACGCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACATGCAACAGCGGCGTTGATATTTTCGCCTAACGACAGAGGTAGCACCGAAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGAGAATTAGCCGATa > 1:581510/1‑149 (MQ=255) gCTTCCGGTTCCCATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCAGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAg > 1:897709/1‑149 (MQ=255) ggTTCCCATCTC‑TTACAAGGGCGTGTAACAGGCAACAGCGGCGATGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGAGCTCAAGACGCAGGATAATTATGCGATAAGCAGTAGCGAcaca > 1:362402/1‑149 (MQ=255) cccATCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTATTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGACGATAATCAGTAGCGACACAGGa > 1:184183/1‑149 (MQ=255) atctcTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGa > 1:450205/2‑149 (MQ=255) ctctTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAACCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGAcc < 2:353717/149‑1 (MQ=255) ctTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGACTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGc > 1:227049/1‑149 (MQ=255) cAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAacac < 2:547291/149‑1 (MQ=255) aCAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGAATGATTaa > 1:979690/1‑148 (MQ=255) aaGGCAACAGCGGAGTTGATATTTTCGCCTTACGTCATAGGTAGCACCGTAATCCGCGTCTTTTCCGCGCTTTGTTGCGCTAAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACTGGAAGACCGCTACACATGACTGATTAcg < 2:184183/148‑1 (MQ=255) gCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGGCTGTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCATCACATGACTGATTAcgcgt > 2:988214/1‑148 (MQ=255) ggcgTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGGGTTTTCCCGGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACTTGAGTGATTACGCGATAAgaatg > 2:257282/1‑145 (MQ=255) ttGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGaaaa < 2:1016585/149‑1 (MQ=255) tGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAATCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAaag > 2:389681/1‑149 (MQ=255) tCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGCCCGCAACACATGACTGATTACGCGATCAGCAAGAAAAGCAAGCGATCGCTGTGGAt > 1:713579/1‑149 (MQ=255) gcAGAGGTAGCAACGTCAGCCGCGTCGTTTCCCCGCGTTGTTGCGCTCAAGACGCTGGATAATTAGCCGTTAAGCAGTAGCGACTCAGGTATACCGCAACACATGACTGATTACGCGATAAGCATGAAAAGCAAGCGAGCGCTTTGGAt < 2:789165/148‑1 (MQ=255) gagGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGTTccc > 1:763361/1‑149 (MQ=255) agGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCg > 1:243745/1‑149 (MQ=255) agGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGACGATAAGCAGTAGCGACACAGGAAGACCGCATCCCATGACTGATTACGCGATAAGAAAGAAAAGCAAGCGATCGCTTTGGATACCg > 2:762007/1‑149 (MQ=255) gTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGAt > 2:35461/1‑149 (MQ=255) cACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGATTCTg < 2:504266/149‑1 (MQ=255) aCCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGATTCTgg > 2:371909/1‑149 (MQ=255) cGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATTATTAGCAGCTAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGAAAGCGATCGGTTTGGATCTCGATTCTGGtt > 2:485245/1‑148 (MQ=255) ATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGATTCTGGTATTCa < 2:355304‑M1/149‑1 (MQ=255) | GCAACAGCAAAGCCAACGCACAGCAAACCATGAACCTCTGGCGGGGGAAGACGACGATACGCTTCCGGTTCCCGTCTCTTTACAAGGGCGTGTAACAGGCAACAGCGGCGTTGATATTTTCGCCTAACGTCAGAGGTAGCACCGTAATCCGCGTCTTTTCCCCGCTTTGTTGCGCTCAAGACGCAGGATAATTAGCCGATAAGCAGTAGCGACACAGGAAGACCGCAACACATGACTGATTACGCGATAAGCAAGAAAAGCAAGCGATCGCTTTGGATCCCGATTCTGGTATTCA > NC_000913/2019387‑2019681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |