New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1100121 =	44 (0.740)	3 (0.050)	3/268	NT	6.8%	coding (482/555 nt)	ycdY	redox enzyme maturation protein (REMP) chaperone for YcdX
	?	NC_000913	1100158 =	39 (0.680)					coding (519/555 nt)	ycdY	redox enzyme maturation protein (REMP) chaperone for YcdX

GGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATAC  >  NC_000913/1100014‑1100305                                                                                                                                                  |                                                                                                                                                    gtaaGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAAtgt                                                                                                                                                 <  1:255174/147‑1 (MQ=255)  gAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAAtgtg                                                                                                                                                <  1:279623/149‑1 (MQ=255)  gAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TAGCACCGCTAACCCGCGATGCCATTAGTGCAAtgtg                                                                                                                                                <  2:363031/149‑1 (MQ=255)  gAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGAGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAAtgtg                                                                                                                                                <  1:729980/149‑1 (MQ=255)         agagCGAAGCACTGGAAACACTGTTCAGTGAGTCTCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAg                                                                                                                                         <  2:459034/149‑1 (MQ=255)          gagCGAAGCACTGGACACACTGTTCAGTGAGTCTCTGTTACCCTGCTGGGGGGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGc                                                                                                                                        <  2:51815/149‑1 (MQ=255)          gagCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGc                                                                                                                                        >  1:85433/1‑149 (MQ=255)          gagCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGGGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGc                                                                                                                                        <  1:425794/149‑1 (MQ=255)          gagCGAAGCAATGTAAACACTGTTCCGTGAGTATCTGTTACCCTGGTGTGGTGCGGTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTACTGCAATGTGGGACGAGc                                                                                                                                        <  2:655617/149‑1 (MQ=255)                 gCACTGGAACCCCTGTTCAGGGAGTATCTGTTACCCTGCGGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGgaaga                                                                                                                                 <  2:247925/149‑1 (MQ=255)                  cACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGTAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGgaagaa                                                                                                                                >  2:420047/1‑149 (MQ=255)                   aCTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGaagaag                                                                                                                               <  1:732631/149‑1 (MQ=255)                    tttatgcaacaacaaattatccgttgcagttatgagtgacgttcatcacacttattcttcagattcttcttcctgatcgaccctcattGCACTAATGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGaagaag                                                                                                                               >  1:725676‑M1/89‑149 (MQ=255)                         aaCAGTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCTCAAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTg                                                                                                                         <  1:734325/149‑1 (MQ=255)                          acacTTTTCAGTGAGTATCTGTTCCCCTGGTGTGGTGCGTGCCGTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGGGATGCCATTAGTTCAATGTGGGACGAGCTGGAAGAAGATTCTga                                                                                                                        <  1:470297/149‑1 (MQ=255)                                 tgaGTGAGTATCTTGTACCCTGGTGTGGTGCGTGCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATaa                                                                                                                 <  1:896993/147‑1 (MQ=255)                                   aGTGAGTATCTGTTACCCTGGTGTGGTGCGGTCCTTCGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCACTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAgt                                                                                                               <  2:111413/149‑1 (MQ=255)                                         tATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATc                                                                                                         <  1:517518/149‑1 (MQ=255)                                            cTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTAc                                                                                                      <  1:831876/149‑1 (MQ=255)                                             tGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGACTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCTATGTGGGACTAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACg                                                                                                     <  1:642044/149‑1 (MQ=255)                                                  cccTGGTGTGGTGCGTGCCTTGGCACAGCGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGAGCTACGTCACt                                                                                                <  2:983301/149‑1 (MQ=255)                                                     ggctgtggcgCGTACCTTGGCAAAGTGGACGCCCATGAAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATAAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCAt                                                                                             <  2:693711/146‑1 (MQ=255)                                                      agtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCaa                                                                                                                                                    >  2:55183‑M1/55‑93 (MQ=255)                                                      agtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCaa                                                                                                                                                    <  1:55183‑M1/39‑1 (MQ=255)                                                        tgtggtgCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAAc                                                                                          <  1:346519/149‑1 (MQ=255)                                                          tggtgCTTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGACTTTCTGGAGCACCA‑TGTCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTg                                                                                        <  2:1016349/149‑1 (MQ=255)                                                                 ttCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGa                                                                                 >  1:806895/1‑149 (MQ=255)                                                                   ccTTGGCAAAGTGGAGGCCCATGCAACCACGCCATTCTGGCGCACCA‑TGGCACCGCAACCCCGCGATGCCCTTAGTGCAGAGTGGGACGAGCTCGAACAAGCTTCTGATGAATAAGTGTGAGCTGCGTCACTGATAACTGGACCGGCTa                                                                               >  2:46564/1‑149 (MQ=255)                                                                        gCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACTGATAAtttt                                                                          >  2:154368/1‑148 (MQ=255)                                                                          aaaGGGGAGGGCCATGCAAGCACGCCTTTCTGGCGCCCCA‑TGGCCACGATAACCCGCGATGCCATTAGTGCAATGTGGGACTAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTATGTCACTCATAACTGCAACGGATAATttgtt                                                                        <  2:199030/149‑1 (MQ=255)                                                                             gTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttgttgtt                                                                     <  2:428509/149‑1 (MQ=255)                                                                             gTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGAGGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttgttgtt                                                                     >  1:924883/1‑149 (MQ=255)                                                                               ggAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGc                                                                   >  1:318662/1‑149 (MQ=255)                                                                                     cttcttccagctcgtcccacattgcactaatggcatcgcgggttagcggtgccattagtgcAATGAGGGTCGATCAGGAAGAAGAATCTGAAGAATAAGTGTGATGAACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATaaa                                                              >  1:725676‑M2/62‑149 (MQ=255)                                                                                                 gCCTTTCTGGCGCACCA‑TGGCACCGCCAACCCGCGCTGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGAt                                                 <  2:926248/149‑1 (MQ=255)                                                                                                          gcgcACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATTTGGGACGAGCTGGAATAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTAGTTGTTGCATAAAATGTGAGCTCGATCtcattcat                                        >  2:339223/1‑149 (MQ=255)                                                                                                          gcgcACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCtcattcat                                        <  2:85433/149‑1 (MQ=255)                                                                                                           ttgcactaatggcatcgcgggttagcggtgccatggtgcAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACt                                                                                                <  1:55183‑M2/54‑1 (MQ=255)                                                                                                           ttgcactaatggcatcgcgggttagcggtgccatggtgcAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACt                                                                                                >  2:55183‑M2/40‑93 (MQ=255)                                                                                                                      cACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCTCGtttt                             >  1:784855/1‑149 (MQ=255)                                                                                                                       aCCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCGCTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTc                            <  1:456045/149‑1 (MQ=255)                                                                                                                          gCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGc                         <  1:530863/149‑1 (MQ=255)                                                                                                                                ccGCTATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAAGAAGTGTGATCTACGTCACTCATAACTGAAACGGATAATTTGTTGTTGCATAAAATGTTTGCTAGATATCATTCATCGCCGCTTTTTCTGCTATCAt                   >  1:414242/1‑149 (MQ=255)                                                                                                                                ccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCAt                   <  1:155749/149‑1 (MQ=255)                                                                                                                                ccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCAt                   <  2:386953/149‑1 (MQ=255)                                                                                                                                        ccATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGAGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTTCTATCATGCGCGGCa           >  1:988394/1‑149 (MQ=255)                                                                                                                                         cATTAGAGCAATGTTGGACGAGCTGCAAGCAGAAACTTAAGAATAACTGTGATCTACGTCAATCATAACTGCAACGGATAATTTTTTGTTGAATAAAATGTGTGCTCGATCTCATACATGGCGGCCTTTACAGCTATCATGCGCGTCAt          >  2:517974/1‑149 (MQ=255)                                                                                                                                               tgcAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATTATATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGAGGCATGAACAt    >  1:1004376‑M2/4‑149 (MQ=255)                                                                                                                                                 cAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTAACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTAATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATAc  >  2:538156‑M2/2‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATAC  >  NC_000913/1100014‑1100305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.