New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1186372	57 (0.960)	3 (0.050)	3/266	NT	5.3%	coding (529/1227 nt)	pepT	peptidase T
	?	NC_000913	= 1186406	53 (0.930)					coding (563/1227 nt)	pepT	peptidase T

AAGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTAAATGCGCTGTC  >  NC_000913/1186268‑1186550                                                                                                                                           |                                                                                                                                                 aaGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGACCGCTgg                                                                                                                                        >  2:271910/1‑149 (MQ=255)  aGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAATAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTggg                                                                                                                                       >  2:124014/1‑149 (MQ=255)    cAGGTATTGCAGACATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATACCGCATGGTGATATTCGCGTCGCCTTTACCCCCGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCt                                                                                                                                     <  2:758222/149‑1 (MQ=255)       gTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTac                                                                                                                                  >  1:649966/1‑149 (MQ=255)        tATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTaca                                                                                                                                 <  1:455934/149‑1 (MQ=255)          ttGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCGTCGATGCCCGCTGGGCTTACACt                                                                                                                               >  1:990825/1‑149 (MQ=255)           tGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTg                                                                                                                              <  2:475318/149‑1 (MQ=255)           tGCACAAATCATGCCCGCCCTGGCGGTATTGAAACAGAAAAAAATTCCGCATGGTGATATTCGCCTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTTGATGCCCGCTGGGCTTACACTg                                                                                                                              <  2:114540/149‑1 (MQ=255)            gCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGt                                                                                                                             >  1:409280/1‑149 (MQ=255)            gCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGt                                                                                                                             <  1:167505/149‑1 (MQ=255)             cAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGtt                                                                                                                            <  1:361860/149‑1 (MQ=255)              aGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGCGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTg                                                                                                                           <  2:612724/149‑1 (MQ=255)                  aTCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGGGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGAtgg                                                                                                                       <  2:349226/149‑1 (MQ=255)                        aCCGCGCTGGCGGTATTGCAACAGAAAAACATTCCGCAGGGTGATATACGCGTCGCCTTAACCCCGCATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACCCTGTTGAtggtggggg                                                                                                                 <  2:632446/149‑1 (MQ=255)                        aCCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGAtggtggtgg                                                                                                                 >  1:848500/1‑149 (MQ=255)                                  cGGTATTGCAACAGAAAAAAATTCCTCATGTTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAACGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGGGGCGTAGGCGaa                                                                                                       <  1:211726/149‑1 (MQ=255)                                   ggTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAAc                                                                                                      <  1:970491/149‑1 (MQ=255)                                          cAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGtt                                                                                               >  1:139931/1‑149 (MQ=255)                                               gAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGAGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTGGATGGTGGTGGGGTAGGCGAACTGGAGTTTGaaa                                                                                          >  2:704173/1‑149 (MQ=255)                                                aaaaaaaTTCCGCATGGTGATATTCTCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGTGGCGAAACATTATGATGTTGACGCCTTCGATGCCCGCTGGGGTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGaaaa                                                                                         <  1:704173/149‑1 (MQ=255)                                                 ataaaaTTCCGCTTGGTGATATTCGCGTCCCATTTACCCCGGAGGATGAAGAGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCATCGATGCCCGCTGGGCTTACACTGATGATGGTGGTGGCGGAGGCGAACTGGAGTTTGAAAAc                                                                                        <  1:662573/147‑1 (MQ=255)                                                 aaaaaaTTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAAc                                                                                        <  1:399949/149‑1 (MQ=255)                                                   aaaaTTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGATGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACtt                                                                                      <  1:980319/149‑1 (MQ=255)                                                       ttCCGCATGGTGATATTCGCGTCGACTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGTACTGGAGTTTGAAAACTTCAAc                                                                                  <  1:636788/149‑1 (MQ=255)                                                             aTGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGATTACTTCAACGCcgcg                                                                            >  2:637125/1‑149 (MQ=255)                                                                gTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCAGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGCAGTGGAGTTTGAAAACTTCAGCGCCGCGTCg                                                                         >  2:445767/1‑149 (MQ=255)                                                                  gATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGt                                                                       <  1:145426/149‑1 (MQ=255)                                                                     atTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCaa                                                                    <  1:124014/149‑1 (MQ=255)                                                                     atTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCaa                                                                    >  2:1031156/1‑149 (MQ=255)                                                                     atTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCaa                                                                    >  1:808827/1‑149 (MQ=255)                                                                         gcgTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAAATTCAACGCCGCGTCGGTCAATATc                                                                >  1:858206/1‑149 (MQ=255)                                                                              gCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAAt                                                           >  1:785492/1‑149 (MQ=255)                                                                               ccTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAAtt                                                          >  1:565666/1‑149 (MQ=255)                                                                                 tttACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGt                                                        >  1:754221/1‑149 (MQ=255)                                                                                   tACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCg                                                      <  1:510149/149‑1 (MQ=255)                                                                                   tACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCg                                                      <  1:432393/149‑1 (MQ=255)                                                                                    aCCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCgg                                                     <  1:445767/149‑1 (MQ=255)                                                                                         ggATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACa                                                >  1:164785/1‑149 (MQ=255)                                                                                             gaagaaGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTAGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGt                                            <  2:649966/149‑1 (MQ=255)                                                                                              tagaagTGGGCAAAGTGGCGAAACATTTTGATGTTGACGCGTTCGATGCCAGCTGTGTTTACACTGTTGATGGTGGTGGCGTAGGCGAAATTGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGtt                                           <  2:616650/148‑1 (MQ=255)                                                                                               agaagTGGGGAATGGGGCGAACCATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTc                                          <  1:1003719/149‑1 (MQ=255)                                                                                                gaagTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGAtgcccacttcttcatccggggtaaaggcgacgcgaatatcaccatgcggaatttttttctgttgcaataccgccagcgcggtcatg                                                            <  1:82103‑M2/130‑87 (MQ=255)                                                                                                gaagTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGAtgcccacttcttcatccggggtaaaggcgacgcgaatatcaccatgcggaatttttttctgttgcaataccgccagcgcggtcatg                                                            >  2:82103‑M2/1‑44 (MQ=255)                                                                                                 aagTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCAt                                        >  1:422261/1‑149 (MQ=255)                                                                                                  agTGGGCAAAGGGGCGAAACATTTTGATGTTGCCGCCTTCGAtgcccacttcttcatccggggtaaaggcgacgcgaatatcaccatgcggaatttttttctgttgctataccgccagcgcggtcatgatttctgcaatacctgctttg                                       <  1:241492‑M2/149‑108 (MQ=255)                                                                                                      ggCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCggg                                   >  1:294589/1‑149 (MQ=255)                                                                                                      ggCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCggg                                   >  1:625792/1‑149 (MQ=255)                                                                                                       gCAAAGGGGCGAAACATTTTGATGTTGACGCCTGCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGc                                  <  2:799479/149‑1 (MQ=255)                                                                                                             gggCGAAACATTTTGATGTTGACGCCTTCGATGACCGCTGGGCTTACACTGTTGAAGGTGGTGGCGTAGGCGAACGGGAGTTTGAAAACTTCAACGCCGCGTCGGTCATAATCAAAATTGTCGGTAACAATGTTAATCCGGGCACGGCg                            >  2:854630/1‑149 (MQ=255)                                                                                                                cGAAACATTTTGATGTTGCCGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGaaa                         >  2:33216/1‑149 (MQ=255)                                                                                                                 gAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAg                        <  2:565666/149‑1 (MQ=255)                                                                                                                    aCATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCTAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAg                     <  1:271910/149‑1 (MQ=255)                                                                                                                       ttttGATGTTGACGCCTTCGATGCCCGGTGGGCTTACACTGATGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACCCAGCGTCGGTCAAAATCAAAATTGTCGGAAACAATTGACATCCGGGCACGGCGAAAGGATTGa                  >  1:900593/1‑149 (MQ=255)                                                                                                                        tttGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGAt                 >  1:406321/1‑149 (MQ=255)                                                                                                                              gTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTaaa           <  2:139931/149‑1 (MQ=255)                                                                                                                                  aCGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGGTTGAAAACTTCAACGCCGCGTCGGTCAAGATCAAAATTGTCGGTAACAATGTTCTTCCGGGCACGGCGAAAGGAGTGATGGTAAATgcg       >  1:65126/1‑149 (MQ=255)                                                                                                                                    gCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTAAATGCGCt     >  1:303544/1‑149 (MQ=255)                                                                                                                                       ttCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTAAATGCGCTGTc  >  2:533673/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                 AAGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTGATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTTCGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCCGCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTAAATGCGCTGTC  >  NC_000913/1186268‑1186550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.