| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 18 (0.300) | 20 (0.380) | 17/244 | NT | 54.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 17 (0.320) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT > NC_000913/1209455‑1209741 | aCGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGCCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 2:196832‑M2/149‑2 (MQ=255) cctaaATCAGGCAATTTATTAGTCGGATAAGCCTTTGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACGATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc > 1:856751‑M2/3‑147 (MQ=255) cGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTATTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCATCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGATcc > 2:214017/1‑149 (MQ=255) aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAACGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct > 2:424461‑M2/1‑143 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGTAATGCAGAGccttctcccaaa < 1:885478‑M2/149‑13 (MQ=255) ggATAAGCCATTGCCAGTTCCGGGTATTCTTCAGCAGTAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag > 1:280794‑M2/1‑123 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga < 2:278623/149‑1 (MQ=255) tGCGAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgatagccgtttgca > 2:264839‑M2/1‑112 (MQ=255) gacagTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGccgtctcccaaaccaaggttttcgcgccccgtttgcac < 2:477154‑M2/147‑39 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAACCGGTACACCAACAGGTAATGCAGAGccttgtcccaacccaaggttttcgagcgccgtttgcacag < 1:1004883‑M2/149‑41 (MQ=255) tttCCGGGTATTCTTAAGCAGAAAAAGCGGAACCATTGCATTTCATCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 2:882781/148‑1 (MQ=255) gtcccGCGTAATCTTCACCACAAACAGCGGCACCAGTGCAATTCAGCCACCCCGGTGGCGGAGCGCCTGAAGGCCACGGAACCGCGACACCAACAGCTAATGCCGAGCCTTCTCCCAAACCAACGATTATGAAACTGAAGAAATAACaa < 2:963228/146‑1 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGccttctcccaaaccaaggttatcgagagccgtttgaacagtgc < 1:709228‑M2/149‑44 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa > 2:300964/1‑149 (MQ=255) ggTTTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCACCCAGCCTGTTGGCGGAGTGGCTGAAGGCGACTGAACCGGGACACCAACTGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAt < 1:214359/149‑1 (MQ=255) tattccgCAGAAAACGCGTCACCATTGCATTTCACCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 2:758956‑M2/3‑96 (MQ=255) tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat < 1:67974‑M2/149‑57 (MQ=255) cagAAAACGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGACCCCAACAGGTAATGCAGAGCCTTCGCCCAAACCATCGTTTATGATAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:190236/1‑149 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg < 1:686234‑M2/149‑61 (MQ=255) aaGCGGCACCAATGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccttttgcacagtgccatccgatttgatatcgccaaac > 1:766488‑M2/1‑83 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg > 2:244361/1‑149 (MQ=255) cataacagccagcctgtaGGCGGAGTGGCTGAAGGCCACGCAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctatgatatcgccaaacggattcttgcggct < 2:232608‑M2/144‑81 (MQ=255) cATATCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa < 1:885196/149‑1 (MQ=255) tCAGCGCGGCTGTTGGCGGAGTGGCTGCTGTCCACGGAACCGGGACCCCACCAGCGAATGCAGAGccttctcccaaaccaagtttttcgagagccgttagcacagggccatccgatttgatatcgccaaacggattcttgcggcttaac > 2:709228‑M2/1‑65 (MQ=255) gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 1:899507/149‑1 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGAAGAGccttctcccaaaccaagggtttcgagagccgtttgcacagtgccatcagagttgatatcgccaaacggattcttgcggcgtaacagcaccgc < 2:316652‑M2/149‑93 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:992351/149‑1 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 1:300964/149‑1 (MQ=255) gtagtGGCTGAAGGCCACGGAACCGGGTCACCAACAGGTAATGCAGAGccttctcccaaacccaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgc > 1:259147‑M2/3‑48 (MQ=255) ccACGGAACCGGGACACCAACATGAAATGCACAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTATTGGCTATGTACGCGTATCAACAAAt < 1:161600/149‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagagcgcgaagtgcggtaagtaactggtcg < 2:553180‑M2/149‑118 (MQ=255) ggAACCGGGACTCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatgcgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactcgtcgtg < 2:348906‑M2/149‑120 (MQ=255) gAACCGGGACACCACCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:918606/149‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac > 1:597862/1‑149 (MQ=255) aaCAGTTAATGCAGAGccttctcccataccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca > 2:727875‑M2/1‑16 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa > 1:419626/1‑149 (MQ=255) ggTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 1:214017/149‑1 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatctcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcgccttctccagggtg < 1:906811‑M2/149‑139 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg < 1:685562‑M2/149‑139 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg < 2:539928‑M2/149‑140 (MQ=255) tAATGCAGAGcattctcccaaaccactgttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg > 2:686234‑M2/1‑10 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTTTCTACAAATTACCAGAACACAGATCTACAACGt > 1:93961/1‑149 (MQ=255) | ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT > NC_000913/1209455‑1209741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |