New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2448302 =	38 (0.640)	3 (0.050)	3/264	NT	8.5%	coding (139/933 nt)	prmB	N5‑glutamine methyltransferase
	?	NC_000913	2448343 =	28 (0.490)					coding (98/933 nt)	prmB	N5‑glutamine methyltransferase

GCGGATCACGCGTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTGCCATGA  >  NC_000913/2448195‑2448491                                                                                                                                                     |                                                                                                                                                     gcggATCACGCGTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTAcc                                                                                                                                                      <  1:296187/149‑1 (MQ=255)    gaatacgtggataaaattttcgttgatgaagcagtaaatgagctgcaaaccattcaggacatgttgcgctggtcggtgagccgcttcagcgcggcaaatatctgGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGa                                                                                                                                                   >  1:742995‑M1/105‑149 (MQ=255)    gATCACGCGTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGa                                                                                                                                                   <  2:252273/149‑1 (MQ=255)     agcACGCGTGCAACAATCCGGGGTGTTTCGCTGGAGGTCAGACGCGCGGTGAGCATATCTTCCGGAATATCCAGCGTCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGat                                                                                                                                                  <  2:899611/147‑1 (MQ=255)          gcgTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTg                                                                                                                                             <  2:369291/149‑1 (MQ=255)           gggataaacttttcgttgctgaagcagtaactgcgctgcaaaccattcaggacatgttgcgctgggcggtgagccgcgtccgcgcggcaaatatctgGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGc                                                                                                                                            >  2:543882‑M1/98‑149 (MQ=255)            gTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCCTCCCACGGGTTATCGCTACCGTGACCGTACAAGATATTTTcc                                                                                                                                           >  1:1032010/1‑149 (MQ=255)                aacaaTACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGATATCGGTACCGGGACCGTACCAGATATTTGCCgcgc                                                                                                                                       >  1:899372/1‑149 (MQ=255)                     tACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCcgcttcagcg                                                                                                                                  >  2:910317/1‑142 (MQ=255)                            tttttCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCACCACCAGCTGTACGGCTTCCTCCCACGGGTGATCGGTACCGTCACCGGACCAGAGATTTGCCGCGCTGAAGCGGCTcc                                                                                                                           >  2:858892/1‑148 (MQ=255)                                          tCAGCCGCGCGGGGCGAATATCATCCGGAATCTCCATCGGCCGGTAGTGCGATGGCAACACCAGCTGTACGGGCTCTTCCCACGGGTAATCGGGACCGGGACCGTACCAGACATTTCCCGCGCTGAAGCGGCTCACCGACCAGCGCAAc                                                                                                             <  2:560248/149‑1 (MQ=255)                                           cAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACa                                                                                                            <  1:499137/149‑1 (MQ=255)                                                gcgcgGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGGAGCGGCTCACCGCCCAGCGCAACATGTcc                                                                                                       >  1:290088/1‑149 (MQ=255)                                                gcgcgGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGGACCAGATATTTGCCGCGCTGAAGCGGCTCACCGCCCAGCGCGACATGTcc                                                                                                       >  2:1007998/1‑149 (MQ=255)                                                 cgcgGGGCGCATATCTTCCGGAATAACCAGCGGCAGGAAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTGATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCt                                                                                                      <  1:511881/149‑1 (MQ=255)                                                      tGCGCATAACTTACGGAATATACAGCGGCAGGTAGAGCGAATGAAACACCAGCTGTACGGCTTCATACCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAATAGGCTCACCGACAAGCTCAAAATGTACTGAATg                                                                                                 >  2:365756/1‑149 (MQ=255)                                                               cTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGc                                                                                        <  1:532228/149‑1 (MQ=255)                                                                ttCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCACATATTTGCCGCCCTGAAGCGGCTCACCGACCAGCGCAACATCTCCTGAATGGTTTGAAGca                                                                                       >  2:303473/1‑148 (MQ=255)                                                                ttCCGGAATATCCAGCGGCAGGTAGAGCGAACGCAACACCAGCTGTACGGCTTCATCCCACGGCTTATCGTTACCGTGACCGTACCAGATATTTGCCGCGCAGAAGCTGCTCACCGACCCGCGCAACATCTCCTGAATGGTATGCAGCt                                                                                       >  2:662109/1‑149 (MQ=255)                                                                           ccAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCTGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCATCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCt                                                                            <  1:469437/149‑1 (MQ=255)                                                                             cgCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTtc                                                                          <  2:725135/148‑1 (MQ=255)                                                                             aGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCCCGTGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTtc                                                                          <  1:695989/149‑1 (MQ=255)                                                                                 gCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGAGCAAGAAGTCCTGAATGGTTTGCAGCTCATTTACTGCTtcatca                                                                      >  1:562228/1‑149 (MQ=255)                                                                                         agCGAAGGCAACACCAGCTGTACGGCTTCATACCAAGGGTTATCGGTACCGTGACCTTACCAGATATTTGCCGCGCTGAAGCGGTTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAAt                                                              <  2:638718/149‑1 (MQ=255)                                                                                             aaGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTa                                                          <  2:771902/149‑1 (MQ=255)                                                                                              aGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTAt                                                         <  1:815541/149‑1 (MQ=255)                                                                                                 gcaaatatctggtacggtcacggtaccgataacccgtgggatgaagccgtacCAGATATTTGCCGCGCGGACGCGGCTCACCGCCCAGCGCAACATGTCCTGAATGGTTTGCAGCGCAGTTACTGCTTCAGCAACGAAAAGTTTAtccc                                                      >  2:543882‑M2/53‑148 (MQ=255)                                                                                                 cAAGACCAGCGGTACGGCTTCATCCCTGGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAACTTTTATcct                                                      <  2:601627/149‑2 (MQ=255)                                                                                                        tctggtacggtcacggtaccgataacccgtgggatgaagccgtacCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATtc                                               >  1:742995‑M2/46‑149 (MQ=255)                                                                                                               cGGCTGCCTCCCAGGCGGGATCGGTACCGCGTCCGGACCAGAATTTTGCCGCTCTGAAGCTGCTCACCGACGAGCGCAACATGTCCTGAATGGTTTTCAGCTAATTTCATTCTTCCTCAACGAAAATTTTATACTCTTATTCCTCCCgg                                        <  2:475918/149‑1 (MQ=255)                                                                                                               CGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAgg                                        >  1:391262‑M1/1‑149 (MQ=255)                                                                                                               CGGCTTCATCCCACGGGTTATCGGTACCGGGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAgg                                        >  2:899372‑M1/1‑149 (MQ=255)                                                                                                                 GCTTCATCCCACGGGTTATCGGTTCCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGc                                      >  2:55703‑M1/1‑149 (MQ=255)                                                                                                                     cATCCCACGGGGTCTCGGTACCGTGACCGTACCAGATATGTGCCGCGCTGAAGCGGCTCACCGACCAGCGGAACATTGCCTGAATGGTTTGCAGCTCATTTCCTGCTTCATCAACGAAAATTTTATCCCCGTATGCCTCCAGGGCATGa                                  <  1:788595/149‑1 (MQ=255)                                                                                                                         cctcGGGTTATCGGTACCGTGACCGTACCAGATATTTGTCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGc                              <  1:857814/146‑1 (MQ=255)                                                                                                                         ccACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGc                              >  1:836223/1‑149 (MQ=255)                                                                                                                          cACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCAAGTATTCCTCCAGGGCATGATCGCa                             >  1:489396/1‑149 (MQ=255)                                                                                                                          cACGGCTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCCGCTCACCGACCAGCGCAACATGTACTGAATGGTTTCCAGCTAATTTACTGCTTCATCAACGAAAATTTTAACCAAGTATTCCTCCAGGGCAAGATCGCa                             >  2:971791/1‑149 (MQ=255)                                                                                                                               aacccgtgggatgaagccgtacCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCaataat                        <  2:742995‑M2/127‑1 (MQ=255)                                                                                                                                             gACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGATTGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGTCTAGtt          <  1:1006403/149‑1 (MQ=255)                                                                                                                                               ccgtacCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTg        <  2:403481‑M2/143‑1 (MQ=255)                                                                                                                                                cgtacCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTGc       <  1:595037‑M2/144‑1 (MQ=255)                                                                                                                                                cgtacCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTGc       <  1:459192‑M2/144‑1 (MQ=255)                                                                                                                                                    cCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGTTCGCCATAATTTCGGCGGCTAGTTTGccagg   >  1:207915‑M2/2‑147 (MQ=255)                                                                                                                                                     cAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAAGGGTTTGCAGCGCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTGCCATGa  <  1:768014/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCGGATCACGCGTTCAACAATACGGTGTTTTTCGCTGGAGGTCAGACGCGCGGTGCGCATATCTTCCGGAATATCCAGCGGCAGGTAGAGCGAAGGCAACACCAGCTGTACGGCTTCATCCCACGGGTTATCGGTACCGTGACCGTACCAGATATTTGCCGCGCTGAAGCGGCTCACCGACCAGCGCAACATGTCCTGAATGGTTTGCAGCTCATTTACTGCTTCATCAACGAAAATTTTATCCACGTATTCCTCCAGGGCATGATCGCAATAATTTCGGCGGCTAGTTTGCCATGA  >  NC_000913/2448195‑2448491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.