New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2806786 =	41 (0.690)	3 (0.050)	3/262	NT	7.5%	coding (777/1065 nt)	proW	glycine betaine/proline ABC transporter permease
	?	NC_000913	2806856 =	35 (0.620)					coding (847/1065 nt)	proW	glycine betaine/proline ABC transporter permease

TCCGGCGGATCTGATTGAAGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGGCGCGACTCACG  >  NC_000913/2806708‑2807004                                                                                                                                                     |                                                                                                                                                     aacggtggcaagccccatatccagacgaccgatcccgcgaagaaccatctgacccaacccgccgacggcaatcatcgaGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCt                                                                                                                                                      >  1:50622‑M1/79‑149 (MQ=255)   cggcggATCTGATTGTAGCCTCGCGCTGATTCGCTGCCAGCCCGCGCCAGATGCTGTTCAAAGGTCAGTGACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCg                                                                                                                                                    <  1:236994/149‑1 (MQ=255)     gcggATCTGATTCAAGCCTCGCGCTCATTCTGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTCACCAGACGCTGATGCTGGCCCTTTGGATGGTGGTCATCGCCTCgat                                                                                                                                                  >  1:991310/1‑149 (MQ=255)       ggATGTGATTGAAGCGGCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTCCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCATACGCTGATGCTGGCCCTTTCTATGGTGTTCATCGCCTCgatga                                                                                                                                                <  2:53538/149‑1 (MQ=255)        gagcTGATTGAAGCCTCGCGCTCAGTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTGCCGCTGGCGATGCCGCCCTTTATGGCGGGCGTTACCCAGCCGCTGAGGCTGGCCCGTTCTATGGTGGTCATCGCCGCgattat                                                                                                                                               >  2:99146/4‑149 (MQ=255)           cTGATTGAAGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGc                                                                                                                                            >  1:129461/1‑149 (MQ=255)            tGATTGAAGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGcc                                                                                                                                           <  1:493193/149‑1 (MQ=255)             gATTGAAGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGCTGCTGGCCCTTTCTATGGGGGTCTTCGCCGCGATGCTTGCCg                                                                                                                                          >  1:1031324/1‑149 (MQ=255)                  aaGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGCTGCTGTTCAAAGTTCAGTTACCGCTGGCGATGTCGACAATTATGGCGGGCGTTACCCAGACGATGATGCTGGCCCTGACTATGGTCGTCAAAGACTCGATGATTGCCGTcggc                                                                                                                                     >  1:787814/1‑149 (MQ=255)                  aaGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTcggg                                                                                                                                     >  1:392178/1‑148 (MQ=255)                  aaGCCTCGCGCTCATTCGGTGCCAGCCAGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGAGCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTGTCTATGGTGGTCATCGCCTCGATGATTGCCGTcggc                                                                                                                                     >  2:589763/1‑149 (MQ=255)                    gCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTcggcgg                                                                                                                                   >  2:432521/1‑149 (MQ=255)                     ccTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCggg                                                                                                                                  >  2:41257/1‑149 (MQ=255)                       tCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGTGGGTCATCGCCTCGATGATTGCCGTCGGCGGGtt                                                                                                                                >  1:902180/1‑149 (MQ=255)                                ttCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGCTGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGAt                                                                                                                       >  2:517039/1‑149 (MQ=255)                                ttCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGAt                                                                                                                       <  2:3885/149‑1 (MQ=255)                                          gCCCGCGCCAGATGCTGTTCAAAGTTCAGATACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTcgc                                                                                                             <  2:13291/149‑1 (MQ=255)                                          gCCCGCGCCAGATGCTGTTCAAAGGTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTcgc                                                                                                             <  1:203217/149‑1 (MQ=255)                                           cccGCGCCAGATGCTGTTCAAAGTGCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTcgcg                                                                                                            <  2:307744/149‑1 (MQ=255)                                                         tGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGTTGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTAGCGGTTTAggtggtgtt                                                                                              >  1:445791/1‑146 (MQ=255)                                                           ttCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGa                                                                                            >  1:445269/1‑149 (MQ=255)                                                            tCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGat                                                                                           <  1:790079/149‑1 (MQ=255)                                                            tCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGat                                                                                           >  1:92756/1‑149 (MQ=255)                                                              aaaGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCGTTTCTATGGTGGTCATCGCATCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTAGCGGTATCGGTCGTCTGGttat                                                                                         >  2:837960/1‑149 (MQ=255)                                                                   tCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGc                                                                                    <  1:928703/149‑1 (MQ=255)                                                                             cTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCTATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGGGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGt                                                                          >  1:601114/1‑149 (MQ=255)                                                                              aggcgatgaccaccatagaaagggccagcatcagcgtctggttaacgcccgccataatggtcggcatcgccTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTTCTTCGCGGGATCGGTCGTCTGGATATGGGGCTTGCCACCGtt                                                                         >  1:50622‑M2/72‑149 (MQ=255)                                                                                gcgatgaccaccatagaaagggccagcatcagcgtctggttaacgcccgccataatggtcggcatcgccTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTgg                                                                       >  1:914172‑M2/70‑149 (MQ=255)                                                                                 cgatgaccaccatagaaagggccagcatcagcgtctggttaacgcccgccataatggtcggcatcgccTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGGATCGGTCGTCTGGATATGGGGCTTGCCACCGTTggc                                                                      <  2:914172‑M2/81‑1 (MQ=255)                                                                                 CGATGCGAACCATTATGGCGGGCGTTCACCAGACTCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCTATGATGGCCGTAGGCGGGTTGGGTCAGATGGTACTTCGCTGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTggc                                                                      >  1:909630‑M1/1‑149 (MQ=255)                                                                                  tATGCCGACCATTATGGCGGGCTTTAACCAGACGCTGAAGCTGGCCCTTTCTATGGTGGTCCTCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTggcg                                                                     >  2:766034‑M1/2‑149 (MQ=255)                                                                                  GATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTggcg                                                                     >  1:432521‑M1/1‑149 (MQ=255)                                                                                    gGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCGGGCCCGTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTGGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTggcggc                                                                   >  1:978551‑M1/2‑149 (MQ=255)                                                                                        gACCATTTTGGCGGGCGTTAACCAGACGCTGATGCTGGCCCATTCTAAGGTGGTCATCGCCTCGATGCTTCCAGTCGGGGGGTTGGGTCAGAAGGTACTTCTAGGAATCGGTCGTCTGGAGATGGGGCGTGCCTCCGGTggcgtctgcg                                                               >  2:692455/1‑143 (MQ=255)                                                                                        gACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCg                                                               >  1:596266/1‑149 (MQ=255)                                                                                                tGGCGGGCGTTCACCAGACGCAGAGGCTGGCCCTTTCTATGGGGGTCATCGCCGCGATGATTGCCCGCGGCGGGTTGGGGCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATtgtg                                                       <  2:888644/149‑1 (MQ=255)                                                                                                        gTTAACCCGACGCTGATGCTGGCCCTTTCTATGGTGGGCATCGGCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTTTCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGTTTGTGATCGTCGc                                               <  2:376081/149‑1 (MQ=255)                                                                                                        gTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGGACATCGCGGTATCGGTCGTCTGGATATGGGGCATGCCCCCGTTGGCGGCGTCGGGATTGTGATCCTCGc                                               >  2:501895/1‑149 (MQ=255)                                                                                                          tAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCa                                             <  1:517039/149‑1 (MQ=255)                                                                                                          tAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGGCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGTGATTGTGATCCTCGCCa                                             <  2:902180/149‑1 (MQ=255)                                                                                                                 aCGCTGATGCTGGACCTTTCTATGGTGGTCATCTCCTCGATGATAGCCGTCGGCGGGTAGTGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTAGGCGGCGTCGGGATAGTGATCCTCGCCATTAACCt                                      >  1:150858/1‑149 (MQ=255)                                                                                                                           tGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGGTCCTCGCCCTTTTCCTCGCTCGTCTg                            >  1:229134/1‑149 (MQ=255)                                                                                                                            ggCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCACGCCATTATCCTCGATCGTCTGa                           >  2:788836/1‑149 (MQ=255)                                                                                                                             gCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGAc                          >  1:417877/1‑149 (MQ=255)                                                                                                                                       tggtggTCATCGCCTCGATGATTGCCGTCGGCGGGTAGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGTCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGtt                >  1:519363/1‑149 (MQ=255)                                                                                                                                         gtggtCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTgg              >  1:752482/1‑149 (MQ=255)                                                                                                                                          tggtCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCAGACGCAGGCCGTTggg             >  2:652439/1‑149 (MQ=255)                                                                                                                                             tCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTTTCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGAGTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGgcgc          >  2:416657/1‑149 (MQ=255)                                                                                                                                             tCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGgcgc          >  2:482056/1‑149 (MQ=255)                                                                                                                                             tCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGgcgc          <  2:392178/149‑1 (MQ=255)                                                                                                                                             gcatcgccTCGATGATTGCCGTCGGCGGGGTGGCTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGGTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGgagc          <  2:601114‑M2/141‑1 (MQ=255)                                                                                                                                                     tCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATAGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTAGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGGCGCGACTCACg  >  1:151700/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCCGGCGGATCTGATTGAAGCCTCGCGCTCATTCGGTGCCAGCCCGCGCCAGATGCTGTTCAAAGTTCAGTTACCGCTGGCGATGCCGACCATTATGGCGGGCGTTAACCAGACGCTGATGCTGGCCCTTTCTATGGTGGTCATCGCCTCGATGATTGCCGTCGGCGGGTTGGGTCAGATGGTACTTCGCGGTATCGGTCGTCTGGATATGGGGCTTGCCACCGTTGGCGGCGTCGGGATTGTGATCCTCGCCATTATCCTCGATCGTCTGACGCAGGCCGTTGGGCGCGACTCACG  >  NC_000913/2806708‑2807004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.