New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3943700	18 (0.300)	3 (0.050)	3/268	NT	14.7%	intergenic (+190/‑4)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon
	?	NC_000913	= 4037477	NA (NA)					intergenic (+142/‑42)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA of rrnA operon

ATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTG  >  NC_000913/4037335‑4037544                                                                                                                                               |                                                                    aTCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTATTGCTCTTTAAAAATCTGGATCAAGCAGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                               <  1:699346/149‑1 (MQ=14)     ctGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                           >  2:966927/1‑149 (MQ=34)      tGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGTTTCACTGCGAAGGTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                          >  1:226521/1‑149 (MQ=21)         aGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga                                                       <  2:730371/149‑1 (MQ=35)           tGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCGATGATGAAt                                                     <  1:934338/149‑1 (MQ=25)           tGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt                                                     >  1:973951/1‑149 (MQ=37)            gATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTGCACTGCGAAGTTTTGCTCTTTAAAAATCTGTATCAAGCTGAAAATTGAAACACTGAAGAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGAAACACGATGATGAAta                                                    >  2:57654/1‑148 (MQ=255)             aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                   >  2:86948/1‑149 (MQ=35)              ttAAATAAAAAATACTTCAGAGTTTACCTGCAAAGGTTCACTGAGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga                                                  <  1:920767/149‑1 (MQ=25)              ttAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTATTGCTATTTAAAAATCTGGATCAAGCTGATAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTGAAATTTTCGCAACACGATGATGAATCga                                                  >  1:413630/1‑149 (MQ=255)               taaataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaa                                                 >  2:760398/1‑149 (MQ=35)                aaataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAATATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa                                                <  2:312661/149‑1 (MQ=37)                aaataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa                                                <  1:732229/149‑1 (MQ=37)                aaataaaAAATACTTCAGAGTGTACCTGCAAAGGTTAACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGATCGTGAGTCTCTCAAAATTTCGCAACACGATGATGAATCgaaa                                                >  2:601507/1‑149 (MQ=255)                  ataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaaga                                              >  1:552621/1‑149 (MQ=37)                  ataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACAATGAACAACGAAAGTTGTACGTGACAATCTCAAATTTTCGCAACACGATGATGATTCgaaaga                                              >  2:503390/1‑149 (MQ=11)                     aaaaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAAc                                           >  1:543412/1‑149 (MQ=37)                          tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCTCAACCCGATGATGAATCGAAAGAAACATCtt                                      >  2:780160/1‑149 (MQ=255)                             ttCAGAGTGTACCTGCAAAGGTTCACTGCGATGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACAAGATGAAGAATCGATAGAAACATCTTCgg                                   >  2:126604/1‑149 (MQ=255)                                agagTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGtt                                <  1:869700/149‑1 (MQ=37)                                    tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                            <  1:554578/149‑1 (MQ=37)                                    tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                            <  1:550051/149‑1 (MQ=37)                                       aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                         >  2:718057/1‑149 (MQ=37)                                           gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAAGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg                     <  2:570872/149‑1 (MQ=21)                                                  ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACCACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa              <  1:892235/149‑1 (MQ=37)                                                         ttaaGTTTTGATCTTTAAAAATATGTATCAAGCTGAAAATTGATACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCATATTTTCGCTACACGATGATGAATCGAAAGAAAGATCTACGGGTTGTGAGGTTAAGCGACTAAGCGTaca       <  2:701889/147‑1 (MQ=11)                                                         cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGATGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTCTGTGGTTAAGCGACTAAGCGTaca       >  2:480053/1‑149 (MQ=255)                                                          gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac      >  2:86365/1‑149 (MQ=33)                                                             gTTTTGCTCTTTAAAAATCTGGATGAAGCTGAATATTGAAACTCTGAACAACGATAGTTGTTCGTGAGTCTGTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt   <  2:744425/149‑1 (MQ=11)                                                             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt   <  2:845133/149‑1 (MQ=31)                                                             gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt   <  1:395876/149‑1 (MQ=31)                                                              ttttGCTCTTTAAAAATCTGGTTGAAGCTGAAATTTGAAACACTGAACCACGACATTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGTTTATGATTCGAAAGAAACATCTTCGGTTTGTGAGTTTATGCGACTAAGCGTACACgtgg  <  2:552206/149‑4 (MQ=11)                                                              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg  <  2:115675/149‑1 (MQ=11)                                                              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg  <  2:119267/149‑1 (MQ=11)                                                              ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg  >  1:434754/1‑149 (MQ=11)                                                                                                                                               |                                                                    ATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTG  >  NC_000913/4037335‑4037544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.