mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 28 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4568685 | 158 (0.860) | 6 (0.030) | 4/264 | NT | 3.7% | intergenic (‑166/‑313) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| ? | NC_000913 | = 4568690 | 165 (0.940) | intergenic (‑171/‑308) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein | |||||
| * | ? | NC_000913 | = 4534139 | 172 (0.930) | 3 (0.020) | 3/258 | NT | 1.9% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 158 (0.920) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4490068 = | 184 (1.000) | 3 (0.020) | 3/272 | NT | 1.8% | intergenic (‑5/+73) | yjgR/idnR | DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding |
| ? | NC_000913 | 4490096 = | 154 (0.850) | intergenic (‑33/+45) | yjgR/idnR | DUF853 family protein with NTPase fold/transcriptional repressor, 5‑gluconate‑binding | |||||
| * | ? | NC_000913 | 4467063 = | 123 (0.670) | 5 (0.030) | 4/270 | NT | 3.9% | coding (184/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | NC_000913 | 4467094 = | 128 (0.720) | coding (153/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | NC_000913 | 4356433 = | 143 (0.780) | 4 (0.020) | 3/254 | NT | 3.3% | intergenic (‑22/+37) | dtpC/cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| ? | NC_000913 | 4356459 = | 104 (0.620) | intergenic (‑48/+11) | dtpC/cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible | |||||
| * | ? | NC_000913 | = 4171803 | 113 (0.610) | 6 (0.030) | 3/274 | NT | 3.7% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 197 (1.080) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4053029 | 225 (1.220) | 4 (0.020) | 3/268 | NT | 1.8% | coding (985/1374 nt) | hemN | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| ? | NC_000913 | = 4053039 | 232 (1.310) | coding (995/1374 nt) | hemN | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent | |||||
| * | ? | NC_000913 | = 3858205 | 373 (2.020) | 7 (0.040) | 4/252 | NT | 2.0% | coding (200/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3858228 | 361 (2.160) | coding (177/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 3854880 = | 430 (2.330) | 6 (0.030) | 5/260 | NT | 1.5% | coding (959/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | 3854940 = | 396 (2.300) | coding (1019/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3762197 | 318 (1.730) | 4 (0.020) | 3/270 | NT | 1.3% | coding (15/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762229 | 321 (1.790) | coding (47/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||