New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4035360	NA (NA)	10 (0.010)	7/266	NT	100%	intergenic (+207/‑171)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
	?	NC_000913	= 4035384	0 (0.000)					intergenic (+231/‑147)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

TTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAA  >  NC_000913/4035346‑4035533                                       |                                                                                                                                                      ttatGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCacggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgt                                        <  2:1625367‑M2/150‑112 (MQ=255)       acacCCCGCGCCGCTGAGAAAAAGCGAAGCGGgtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagt                                   <  1:11141270‑M2/150‑118 (MQ=255)       acacCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtg                                  <  1:2622044‑M2/150‑118 (MQ=255)       acacCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtg                                  <  2:1669569‑M2/150‑118 (MQ=255)         acCCCGCGCCGCTGAGAAAAAGCGAAGCGGCacggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtc                                <  1:8489483‑M2/150‑120 (MQ=255)            ccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagt                             <  2:4105668‑M2/150‑123 (MQ=255)             cgcgCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtg                            <  1:1211599‑M2/150‑124 (MQ=255)              gcgcCGCTGAGAAAAAGCGAAGCGGCacggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtgg                           <  2:2721077‑M2/150‑125 (MQ=255)              gcgcAGCTGAGAAAAAGCGAAGCGGCacggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtgg                           <  2:8867956‑M2/150‑125 (MQ=255)               cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggt                          <  1:12238317‑M2/150‑126 (MQ=255)                               ctccgcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggag          >  1:11238661‑M2/5‑9 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       <  2:9438782‑M2/150‑145 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       >  2:10937583‑M2/1‑6 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       <  2:9445467‑M2/150‑145 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       <  2:10607403‑M2/150‑145 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       <  2:10607358‑M2/150‑145 (MQ=255)                                  agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta       <  1:9505473‑M2/150‑145 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttat      >  2:4686258‑M2/1‑5 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttat      <  2:4711461‑M2/150‑146 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttat      <  1:2836411‑M2/150‑146 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttat      <  1:3075966‑M2/150‑146 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccctgtcagtggtggcgcattatagggagttat      <  1:6622904‑M2/150‑146 (MQ=255)                                   gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatatttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgtggttccgtgtcagtggtggcgcattatagggagttat      <  1:1834995‑M2/150‑146 (MQ=255)                                    cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttatt     <  1:5038031‑M2/150‑147 (MQ=255)                                    cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttatt     <  2:2427259‑M2/150‑147 (MQ=255)                                    cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttatt     >  1:2341585‑M2/1‑4 (MQ=255)                                    cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttatt     <  1:5037959‑M2/150‑147 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    >  1:969907‑M2/1‑3 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    >  2:8704537‑M2/1‑3 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    >  1:2930619‑M2/1‑3 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    >  1:11122872‑M2/1‑3 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    >  1:1178998‑M2/1‑3 (MQ=255)                                     ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattc    <  1:6239557‑M2/150‑148 (MQ=255)                                      gcgcggggtgtgcatactacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   >  2:11586185‑M2/1‑2 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   >  2:9371371‑M2/1‑2 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   <  2:9742792‑M2/150‑149 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   <  2:4531513‑M2/150‑149 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   >  2:3265703‑M2/1‑2 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   <  2:11799216‑M2/150‑149 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   >  2:11766188‑M2/1‑2 (MQ=255)                                      gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattcc   <  2:10049700‑M2/150‑149 (MQ=255)                                       cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  <  2:4495655‑M2/150‑150 (MQ=255)                                       cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  <  2:4494583‑M2/150‑150 (MQ=255)                                       cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  >  2:5448387‑M2/1‑1 (MQ=255)                                       cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  >  2:1219014‑M2/1‑1 (MQ=255)                                       cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  >  2:10859138‑M2/1‑1 (MQ=255)                                       cgcggggtgtgcagaatccgccgtcccgcgacagagtcaagcatttattttggctttctctgccggagttctcaggagaaccccgctgacccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccg  >  2:4188445‑M2/1‑1 (MQ=255)                                       |                                                                                                                                                      TTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAA  >  NC_000913/4035346‑4035533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.