| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,606,207:1 | +G | 100% | noncoding (80/87 nt) | leuP ← | tRNA‑Leu |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,606,207 | 1 | . | G | 88.8% | 287.0 / 34.5 | 89 | noncoding (80/87 nt) | leuP | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (5/5); new base G (48/31); total (53/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
GTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAA > NC_000913/4606068‑4606337 | gTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTgag‑a > 1:646046/1‑140 (MQ=255)gTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCATCGATTGGTGCG‑a > 1:451641/1‑140 (MQ=255) aTAATTGGTGCGA‑GGGGGGGACTTGAACCCCCACGTCCGAAAGGACACTAACACCTGCAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTGGATATCGCCTCGTTTGGTGCG‑A‑‑g‑gg‑gggg < 2:358/140‑1 (MQ=21) aTAATTGGGGCG‑CGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑g‑gg‑gggg < 2:211/140‑1 (MQ=255) aaTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCACGTTTGGTGCG‑A‑‑g‑gg‑ggggg < 2:1316227/140‑1 (MQ=255) aaTTGGTGCGA‑GGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑g‑gg‑gggggg > 2:942785/1‑139 (MQ=255) ttGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTTTTTGATATCGAATCGTTTGGTGCG‑A‑‑g‑gg‑gggggga > 2:113795/1‑138 (MQ=255) tGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTg > 1:463163/1‑140 (MQ=255) gCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGa < 1:1255699/140‑1 (MQ=255) gCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCATCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGa < 1:549739/140‑1 (MQ=255) aGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAAcc > 1:1306728/1‑140 (MQ=255) gACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTc < 1:1155440/140‑1 (MQ=255) gACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTc < 1:226352/140‑1 (MQ=255) aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAg < 1:709233/140‑1 (MQ=255) aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAg < 1:709208/140‑1 (MQ=255) aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAACTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAg < 1:709456/140‑1 (MQ=255) aCCCCCACGTCCGTAAGGACACTAACACCTGATGCTAGCGCGTCTACCATTTCCGCCACCTTCTCACAGTCATCTTACTTTTTTTGATATCGCCTCTTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGaa < 1:84631/140‑1 (MQ=255) aCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTATACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGaa < 1:85030/140‑1 (MQ=255) ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAacac > 1:1382862/1‑140 (MQ=255) ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAacac > 1:1383275/1‑140 (MQ=255) ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTAGATAACGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGACCGTAAGAacac > 1:3080/1‑140 (MQ=25) ccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGAAATATTACTTTTTTTGATATCGAATCGATTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACACCCACGACAGTAATAacac > 1:1382767/1‑140 (MQ=18) cACGTCCGTAAGCACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGACATCTTACTTTTTTTGATATCGCCACCTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 1:455112/140‑1 (MQ=37) aCGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTa > 2:13698/1‑140 (MQ=255) aCGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTAATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGTCTTCAACCCCCACGTCCTTCAGAACACTa > 2:13670/1‑140 (MQ=25) cGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 1:1495769/140‑1 (MQ=255) cGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 1:430275/140‑1 (MQ=255) tCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGGCATCTTACTTTTTTTGATATCGCCGCGTGTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAacac > 1:341006/1‑140 (MQ=255) cGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑G‑GGAGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACAcc < 2:188981/140‑1 (MQ=255) cGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCATCGTATGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTCACAcc > 2:1515897/1‑140 (MQ=37) tAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGATCCCCCACGTCCGTAAGAACACTAACACCTg > 2:1356705/1‑140 (MQ=255) tAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACAcc > 1:915520/1‑138 (MQ=255) tAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACAcc < 2:915520/138‑1 (MQ=255) tAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGACCGTAAGAACACTAAAACCTg > 2:493183/1‑140 (MQ=255) tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AGGG‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACAAACACCTGAAGCTAgc > 2:1464506/1‑140 (MQ=255) tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcg > 1:1782488/1‑140 (MQ=255) tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGACATCTTACTTTTTTTGATATCGAAGCGTTTGGTGGG‑A‑‑GTGG‑GGGGGACTTGAACACCCACTTCCGAAAGAAGAATAACACCTGATGCTAgag > 2:1749171/1‑138 (MQ=25) tAACACCTGAAGCTAGCGCGTCTACCAAGTCCGCCTCCTTCGCACAGGCATCTAGGTTTTTTTTCTTTCGGGGCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGTACCCCCACGTCCGTATGTACAGTGAGACCTGAAGGTAgcg > 2:1209292/1‑140 (MQ=16) aaCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCTTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGTACACTAACACCTGAAGCTAgcgc < 1:1680885/140‑1 (MQ=255) acCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTc < 2:1689925/140‑1 (MQ=255) ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCt > 2:1814289/1‑140 (MQ=255) ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTGTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCAGTCTGTACACTAACACCAGAAGCTAGCGCGTCt > 2:1923777/1‑140 (MQ=37) cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa > 1:1899683/1‑140 (MQ=255) cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGAATCGTTTGGTGCG‑AG‑G‑GG‑GGGGGCCTTGAACACCCACGGGCGTAATAAAACTAAAACCAGAAGCTATACCGTCTa > 1:1412735/1‑140 (MQ=25) gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AGGG‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc > 1:389631/1‑140 (MQ=255) gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAcc < 2:938619/140‑1 (MQ=255) gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAcc > 2:1666768/1‑140 (MQ=255) gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAca > 1:704058/1‑139 (MQ=255) gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGACTTCTTACTTTTTTTGATATCGCATCGGTTGGTGGG‑A‑‑GTGG‑GGGGGAATTGAACAACAACTTCAGTATGATCACTCTCTCCTGAAGCTAGCGCGTCTAcc > 2:1757071/1‑140 (MQ=19) tAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTc > 1:1508121/1‑140 (MQ=255) aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc > 2:1442913/1‑140 (MQ=255) aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc > 1:1374191/1‑140 (MQ=255) ctagTCTACCTTTTCCGGCTCCTTCGCACATTGATCTTAATTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCAACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:834425/137‑1 (MQ=18) cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCAACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:837403/140‑1 (MQ=255) cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCAACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:1477577/140‑1 (MQ=255) tcgaCCAATTCCGCCACCTTCGCACAGGCATCTTACTATTTTTGTTATCGCCTCGATAGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc > 2:1837784/4‑140 (MQ=21) tCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 1:144360/140‑1 (MQ=255) tCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACATTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACTTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATACCGCCAcc > 2:1838609/1‑140 (MQ=21) aaTTCCGCCACTTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 1:1546441/140‑1 (MQ=255) aaTTCCGCCACTTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 1:1375840/140‑1 (MQ=255) aaTTCCGCCACCTTCGCACAGTCAACTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 1:1338469/140‑1 (MQ=255) ccGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt < 2:1374191/140‑1 (MQ=255) cGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg < 1:516108/140‑1 (MQ=255) ccACCTTCGCACATTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 2:801797/140‑1 (MQ=255) ccACCTTCGCACAGGCATCTTACTTTTTTTGATATCGCCTCGGTTGGTGCG‑AGGG‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGGGc > 1:559870/1‑140 (MQ=21) aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:536616/140‑1 (MQ=255) aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:824962/140‑1 (MQ=255) tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 2:664697/76‑1 (MQ=255) tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACt > 1:664697/1‑76 (MQ=255) tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGt > 2:1601066/1‑140 (MQ=255) tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAAACCCCACGTCCGTAAGAAAACTAACACCTGAAGCTATCGCGGCAACCAATTCCGCCACCTTCGCCCAGTGCGAGCAAATTCAACgg > 1:1481887/1‑139 (MQ=21) cTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtt > 1:445397/1‑140 (MQ=255) ttACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt < 2:1624084/140‑1 (MQ=255) cTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCACTATCAACGTGGTTTTTg > 2:356367/1‑140 (MQ=255) cTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg > 2:1558093/1‑140 (MQ=255) cTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg > 1:446267/1‑140 (MQ=255) cTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg > 1:446095/1‑140 (MQ=255) cTTTTTTTGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTg > 2:492519/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCACTATCAACGTGGTCTATGGt > 2:1425579/1‑140 (MQ=21) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt > 2:1876129/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt > 2:1876326/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGt > 2:1503829/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGAGAGCAATATCAAAGTGGTTTTTGGt > 2:236114/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGCGAGCAATATCAACGTGGTTTTTGGt > 2:1590828/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGCCACCTTCGCCCAGTGCGAGCAATATAAACGTGGTTTTTGGt > 2:1085036/1‑140 (MQ=255) ttttttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAAAACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATAACAACGTGGTGTTTGGt > 2:1401134/1‑140 (MQ=21) tattttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGAAAGAACACTAACACCTGAAGCTAGCGCGACTACCAATTCCGCCACCTTCGCCCAGAGCGAGCAAAATCAACGAGGTTTTAGGt > 2:1590834/3‑140 (MQ=18) ttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACTCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGa > 2:165628/1‑140 (MQ=255) ttGATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGa > 2:661577/1‑140 (MQ=255) gATATCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTCGCGCGTATACCAATTCCGACACATTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgg < 1:1099222/140‑1 (MQ=21) atCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggggg < 1:436623/140‑1 (MQ=255) atCGCCTCGTTTGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGG‑TTTTGGTGCGAgggggg < 2:526107/140‑1 (MQ=255) tCGCCTCGTTTGGTGCGTG‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAgggggg < 1:609491/140‑1 (MQ=255) tCGTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACtt > 1:104231/1‑140 (MQ=255) tttGGTGCG‑AG‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGa < 1:661577/140‑1 (MQ=255) tgtGGTGCG‑A‑‑G‑GG‑GGGGGACTTCAACCCCCACGGCCGGAAGAACACTAACACCAGAAGCTAGCGCGTCTACCAATTCCGCCCCCAGCCCCCACAGCCACCAATATCAACGGGGGTGTTGGTTCGAGGGGCGGGACTAGaa > 2:601974/3‑140 (MQ=9) | GTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCG‑A‑‑G‑GG‑GGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAA > NC_000913/4606068‑4606337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |