| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,753,308 | T→C | 6.9% | V505A (GTC→GCC) | recN → | recombination and repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,753,308 | 0 | T | C | 6.9% | 186.0 / 4.7 | 58 | V505A (GTC→GCC) | recN | recombination and repair protein |
| Reads supporting (aligned to +/- strand): ref base T (24/30); new base C (2/2); total (26/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
AAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCTT > NC_000913/2753173‑2753447 | aaGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGc > 1:1635117/1‑140 (MQ=255)aaGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGc > 1:547129/1‑140 (MQ=255)aaGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGc > 2:1822840/1‑140 (MQ=255) gATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGTTGTGGTCATCAACACTATTTTGTCAGCAAAGa < 2:1134966/140‑1 (MQ=255) gATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGa < 2:1134429/140‑1 (MQ=255) ggATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGAt < 2:1841119/140‑1 (MQ=255) ggATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGAt < 2:1840799/140‑1 (MQ=255) tAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTg > 2:1638471/1‑140 (MQ=255) tCCAACAGCTGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGa > 1:697341/1‑140 (MQ=255) tCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGa > 1:1213741/1‑140 (MQ=255) tCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGAGGa > 1:1114272/1‑140 (MQ=255) cAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACa > 1:1462869/1‑140 (MQ=255) aCAGCGGCAGTTGTCTGCAAACTGCTGCGTCTACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGAGGGTGCGATGACAGa < 2:1758929/140‑1 (MQ=255) aCAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGa < 2:1281132/140‑1 (MQ=255) aCAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGa < 1:1777132/140‑1 (MQ=255) ggCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGc > 2:754457/1‑140 (MQ=255) gCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCa > 1:1370503/1‑140 (MQ=255) aGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCata > 2:1250449/1‑140 (MQ=255) aCTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGa > 2:258811/1‑140 (MQ=255) aCTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGa > 1:1077993/1‑140 (MQ=255) tCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAg > 2:223981/1‑140 (MQ=255) cAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCTCCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAgc < 1:602850/140‑1 (MQ=255) cAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAgc < 1:428556/140‑1 (MQ=255) cAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAgc < 1:428795/140‑1 (MQ=255) cAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAgc < 1:138157/140‑1 (MQ=255) aaCTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAgcg < 1:682977/140‑1 (MQ=255) gTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGgcgcg > 1:1008396/1‑140 (MQ=255) tGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGgcgcgc < 2:943640/140‑1 (MQ=255) tGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGgcgcgc < 2:1382356/140‑1 (MQ=255) gATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGcc < 1:1638471/140‑1 (MQ=255) gtgtgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGCCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGcc > 1:1687914/1‑137 (MQ=255) gtgtgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGCCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGcc > 1:1687805/1‑137 (MQ=255) gtgtgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGCCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGcc < 2:1687805/137‑1 (MQ=255) gtgtgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGCCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGcc < 2:1687914/137‑1 (MQ=255) tgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTtg > 1:742705/1‑140 (MQ=255) tgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTtg > 2:397312/1‑140 (MQ=255) tgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTtg > 1:743601/1‑140 (MQ=255) tgtTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATCGTGCGATGACAGAAACGCATATCCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCtag > 1:1731922/1‑138 (MQ=255) gtTACCCACCTGCCACCAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTtgg < 1:1158913/140‑1 (MQ=255) aCCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTtggtgg < 2:1403830/140‑1 (MQ=255) aCCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGt < 1:715328/140‑1 (MQ=255) cTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTgg < 2:1785442/118‑1 (MQ=255) cTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTgg > 1:1785442/1‑118 (MQ=255) gCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAg > 2:873044/1‑140 (MQ=255) cacaAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTc < 2:1510591/140‑1 (MQ=255) caAGTCGCGGGTTGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTcac < 1:1342315/140‑1 (MQ=255) caAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTcac < 2:739124/140‑1 (MQ=255) caAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTcac < 2:1794787/140‑1 (MQ=255) gTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACg < 2:1566658/140‑1 (MQ=255) gTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACg < 2:1566369/140‑1 (MQ=255) tCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGt > 2:1809238/1‑140 (MQ=255) cgcgGGATGTGGTCATCAACACTATATTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTa < 2:529974/140‑1 (MQ=255) gATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATaca < 2:717756/140‑1 (MQ=255) gATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATaca < 2:718349/140‑1 (MQ=255) tgGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTgg > 2:545989/1‑140 (MQ=255) ggTCATCAACACTATTTTGTCAGCAAAGAAGCCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGc < 2:1292307/140‑1 (MQ=255) tcaACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATg < 1:145560/140‑1 (MQ=255) ttttGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAAc > 1:1743595/1‑140 (MQ=255) tCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCtt > 2:1588955/1‑140 (MQ=255) | AAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTCGGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAAAGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGCTTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCTT > NC_000913/2753173‑2753447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |