breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3787895 =295 (2.900)3 (0.030) 3/236 NT 1.1% coding (1058/1260 nt) envC activator of AmiB,C murein hydrolases, septal ring factor
?NC_000913 = 3787891 271 (2.890)coding (1054/1260 nt) envC activator of AmiB,C murein hydrolases, septal ring factor
* ? NC_000913 = 197948962 (0.610)3 (0.030) 3/256 NT 4.6% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region
* ? NC_000913 1293032 =160 (1.570)4 (0.040) 3/256 NT 2.4% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region
* ? NC_000913 = 37496384 (0.830)4 (0.040) 3/248 NT 4.8% noncoding (34/436 nt) REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 = 377387 79 (0.800)noncoding (53/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 = 283268676 (6.650)9 (0.100) 8/230 NT 1.3% coding (68/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
?NC_000913 284172 = 764 (8.360)coding (972/1968 nt) yagF CP4‑6 prophage; dehydratase family protein