New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1180354 =	NA (NA)	7 (0.020)	3/264	NT	NA	noncoding (1/96 nt)	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	1180379 =	NA (NA)					noncoding (26/96 nt)	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TGCCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1180509‑1180354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACACC  >  NC_000913/1180379‑1180526                                                                                                                                                                                                                                                                                                                  TGCCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCA                                                                                                                                                            >  2:1629852/1‑150  GCCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGATCGCATTATGAGGCCCACAAAAGCCGCAAATTAAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCAT                                                                                                                                                           <  2:2536787/150‑1   CCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATC                                                                                                                                                          >  2:3888495/1‑150   CCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATC                                                                                                                                                          >  1:3590240/1‑150    CGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCA                                                                                                                                                         >  2:2122497/1‑150    CGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCA                                                                                                                                                         <  1:4488408/150‑1     GCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAG                                                                                                                                                        <  2:2772838/150‑1     GCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAG                                                                                                                                                        >  2:1539253/1‑150     GCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAG                                                                                                                                                        >  2:1538565/1‑150      CATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGG                                                                                                                                                       <  1:551498/150‑1       ATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGC                                                                                                                                                      >  1:1754571/1‑150                                                                                                             CAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGC                                                                    <  1:74510/130‑1                                                                                                             CAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGC                                                                    >  2:74510/1‑130                                                                                                             CAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGC                                                                    <  1:44542/130‑1                                                                                                             CAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGC                                                                    >  2:44542/1‑130                                                                                                                                    GCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAAT                         >  2:1975304/1‑150                                                                                                                                    GCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAAT                         >  1:1078167/1‑150                                                                                                                                    GCCTGATAAGCGTAGTGCATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAAT                         >  2:2927687/1‑150                                                                                                                                                       TCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGA      <  2:925757/150‑1                                                                                                                                                       TCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGA      >  2:1468129/1‑150                                                                                                                                                       TCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGA      <  1:4602275/150‑1                                                                                                                                                         AGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACA    >  1:5231821/1‑150                                                                                                                                                         AGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACA    >  2:825643/1‑150                                                                                                                                                         AGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACA    <  1:4573094/150‑1                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACcc   >  2:430452/1‑148                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACAC   >  1:2781855/1‑150                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACAC   <  2:2696316/150‑1                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACAC   <  2:2463813/150‑1                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACAC   >  1:2781915/1‑150                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACAC   >  2:1754049/1‑150                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCA                                                                 <  2:822080/88‑1                                                                                                                                                          GGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCA                                                                 >  1:822080/1‑88                                                                                                                                                           GCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCCTCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACCGACACC  >  1:5346611/1‑150                                                                                                                                                           GCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACACC  >  1:2434579/1‑150                                                                                                                                                                                                                                                                                                                  TGCCGCATTGTTATTGACGAGTAAACGATAAAAGAGGCCGGAAAAGTGCGCGTGTATTATTCCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1180509‑1180354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTACAGACACC  >  NC_000913/1180379‑1180526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.