New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1287084135 (0.390)10 (0.030) 6/238 NT 6.8% noncoding (153/171 nt) rttR rtT sRNA, processed from tyrT transcript
?NC_000913 1287557 = 160 (0.550)noncoding (66/85 nt) tyrT tRNA‑Tyr

Only 100 of 203 total aligned reads displayed.

GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233
                                                                                                                                                     |                                                                                                                                                     
agcgtTGCCGCAGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGAAGGATT                                                                                                                                                       >  2:3480472‑M1/3‑150 (MQ=255)
 tCGTTGCCTGCGGCATCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTCCTCATCCGTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  2:5344881/150‑1 (MQ=255)
 tCGTTGCCTGCGGCACCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCCTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                                      <  2:2458848/150‑1 (MQ=255)
    ttGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTc                                                                                                                                                   <  1:3036346/150‑1 (MQ=255)
    ttGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCACATCCATCCCCGCATGGGCCGAAGATTTGAATGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATTACTc                                                                                                                                                   >  1:4299447/1‑150 (MQ=17)
       ccTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc                                                                                                                                                >  2:4869365/1‑150 (MQ=255)
                 cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTACCCCGCATGGGCAGAATATTTTATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCt                                                                                                                                      >  1:5119929/1‑150 (MQ=255)
                 cGCTCTCTCGCTGACGCTAGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGCGCt                                                                                                                                      >  1:3586515/1‑150 (MQ=255)
                   ctctctCGCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCGTCCCCGCATGGGCTGAATATTTGATTGCGGATTCGATTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                                    <  1:5045953/150‑1 (MQ=255)
                   ctctctCGCTGCCGCTCCAGCCGAACGTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGACTAATAGATTGCGGATTCGCTTGAGTGTTCCGGGACTTTTGAAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                                    <  1:1524503/150‑1 (MQ=11)
                       ctcGCTGACGCTCGAGCCGAACCTTAGTCGAATATTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTTCTGCTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATAAGCGCTGCGCGCATCTccc                                                                                                                                >  1:3334952/1‑150 (MQ=17)
                        tcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACGTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCACCGCTGCGCGCTTCGCCCt                                                                                                                               >  1:4123543/1‑150 (MQ=255)
                          gCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTGATTGCGGATTCGCTTGAGACTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                                             <  2:894250/150‑1 (MQ=255)
                          gCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTc                                                                                                                             >  1:3245276/1‑150 (MQ=255)
                          gCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCtac                                                                                                                             >  1:5777307/1‑148 (MQ=255)
                            tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGATTATTTGATTGCGGATTCGCTTGAGAGTTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCgg                                                                                                                           <  2:1308590/150‑1 (MQ=255)
                               cGCCCGAGCCGAACCCTAGGCGAAGCCTCTCCTCCTTCCCCGCCTGGGCAGAAGATTCGCTTGCGGACTCGCTTGAGAGTTCGCTGACTTTAGCAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc                                                                                                                        <  2:2099492/150‑1 (MQ=14)
                                    gAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc                                                                                                                   >  1:2068482/1‑150 (MQ=255)
                                          aaCCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCgg                                                                                                             >  2:1862291/1‑150 (MQ=255)
                                             cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaa                                                                                                          >  1:3844231/1‑150 (MQ=255)
                                              ttAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCaaa                                                                                                         >  2:5011443/1‑149 (MQ=255)
                                              ttAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAAc                                                                                                         >  2:3595874/1‑150 (MQ=255)
                                                tgtCGAAGCTTCTCATCCCTCGCCGCATGGGCACTATATTTGATTGCGGATTCGTTTGATAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttgg                                                                                                       <  2:5636571‑M1/149‑49 (MQ=255)
                                                  tCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCAAGctc                                                                                                     >  1:1620897/1‑150 (MQ=255)
                                                    gAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAATCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCATGCGGCAAAGctctc                                                                                                   >  1:5521247/1‑150 (MQ=255)
                                                          tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTg                                                                                             >  2:4229042/1‑150 (MQ=255)
                                                            tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGgc                                                                                           >  1:2796363/1‑150 (MQ=255)
                                                            tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCGGCCGCACCGCGCTCGCGCGGgc                                                                                           >  1:5670472/1‑150 (MQ=14)
                                                            tcATCCTTCCCCGCAGGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgc                                                                                           >  2:1906807/1‑150 (MQ=255)
                                                              aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                                         >  1:3182032/1‑150 (MQ=255)
                                                               tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTTCGCt                                                                                        >  2:4225711/1‑150 (MQ=255)
                                                               tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgcg                                                                                        >  2:5083138/1‑149 (MQ=255)
                                                                ccTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTc                                                                                       >  1:5652988/1‑150 (MQ=255)
                                                                  ttCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCTCACTCGCTGTCGCTCGa                                                                                     >  2:5509821/1‑150 (MQ=255)
                                                                     cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTc                                                                                  <  1:535098/150‑1 (MQ=255)
                                                                        gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                               >  1:3353409/1‑150 (MQ=255)
                                                                             ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTg                                                                          <  2:2374844/150‑1 (MQ=255)
                                                                             ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTg                                                                          >  2:3641835/1‑150 (MQ=255)
                                                                              gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCATgg                                                                         >  1:4510846/1‑150 (MQ=255)
                                                                              gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTGGCCAGCGGCAACGCACACACGCTGGCGCACGAGTCGAACCATgg                                                                         >  1:2367066/1‑150 (MQ=14)
                                                                                aGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGGCGCTCGAGTCGAACCATGGTc                                                                       >  2:298352/1‑150 (MQ=255)
                                                                                   atatTTGAGTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGaa                                                                    <  2:4678703/150‑1 (MQ=255)
                                                                                     atTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                                  <  1:1906807/150‑1 (MQ=255)
                                                                                     atTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                                  <  2:4299447/150‑1 (MQ=255)
                                                                                     atTTGAGTGCGGATGCGATTGAGACTTCCGGGCCATTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                                  <  2:3308222/150‑1 (MQ=11)
                                                                                                     gCTTGAGACGTCCGGGACTGTTGAAAGTGATGGTGGTGGGGGCAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCg                                                  <  1:2265749/150‑1 (MQ=11)
                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTGTGTCGAAGGTTCTCAACCTTCCCCGcg                                                >  2:5708299/1‑149 (MQ=255)
                                                                                                       ttGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCATACCCGcc                                                >  1:1003112/1‑149 (MQ=255)
                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcgggg                                      >  2:10179‑M1/1‑37 (MQ=255)
                                                                                                                 aGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTGGTCGAAGCTTAACATACATCCCCCCAAGGGCCGAat                                      >  1:5586965/1‑150 (MQ=14)
                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca                                                                                                                      <  2:1229810‑M1/68‑34 (MQ=255)
                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttaca                                                                                                                      >  1:1229810‑M1/1‑35 (MQ=255)
                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGTGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCATCCCCCCCTGGGCAGAaaat                                    >  2:1544259/1‑150 (MQ=14)
                                                                                                                   ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCAGGCGCGCGAATCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAatag                                    >  1:4258799/1‑149 (MQ=14)
                                                                                                                    gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAtt                                   <  2:2068482/150‑1 (MQ=38)
                                                                                                                       ttttGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatc                                >  2:649565‑M1/1‑31 (MQ=255)
                                                                                                                        tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCCACCCGCTCACGCAGGCGCGCGAGTCGAAACAAGGTCGAAGCATCTCAAACAAACCCCCAAGGGCAGAATATATaaa                               >  1:1459216/1‑149 (MQ=2)
                                                                                                                          tGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccttt                                                                                                         >  1:2390060‑M1/1‑28 (MQ=255)
                                                                                                                          tGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTg                             >  2:5257255/1‑150 (MQ=39)
                                                                                                                           gacagtgATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatat                            <  2:3986463‑M1/147‑124 (MQ=255)
                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGc                            <  1:954457/150‑1 (MQ=17)
                                                                                                                           gAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAtt                                   >  2:3342728/1‑143 (MQ=17)
                                                                                                                            aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCg                           <  2:1436646/150‑1 (MQ=39)
                                                                                                                             aaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCgg                          <  1:4167037/150‑1 (MQ=39)
                                                                                                                              aGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcgggg                                      >  1:3474218‑M1/1‑24 (MQ=255)
                                                                                                                                tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACCCGCACTCGCTGGCGCGCGAGTCGCAACCTGGTCGAAGCTTCACAAACATACCCGCAGGGGCAGAAAAATTAAATGCggggt                       >  1:4804433/1‑147 (MQ=11)
                                                                                                                                tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCACTCACGCTGGCGCACCAGTCGAACCATGGTAGAATCATATCAACCTTACCCCCAAGGGCCGAAAAATTAATTGCGGaat                       >  1:402305/1‑148 (MQ=11)
                                                                                                                                  aTGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatga                     <  1:4339758‑M1/150‑131 (MQ=255)
                                                                                                                                  aTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCTCTTCGCCCTTCGGGACGTTGCCTGCGGCAACGATCTCTCGCTTGCGCACCACTCCACACAGTGTCGAAGCGACACATACTACCCCGCATGGGCCGAATATTTAGTGGCGGAATCg                     >  2:5167615/1‑150 (MQ=2)
                                                                                                                                  aTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAGACGTGGTCGAAGCTTCTCAGACTACCCCGCGTGGGCAGTATATTTAGTTGCGGATTCg                     >  2:3809378/1‑150 (MQ=11)
                                                                                                                                   tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgac                    >  2:2543658‑M1/1‑19 (MQ=255)
                                                                                                                                   tggtggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgac                    >  2:5428150‑M1/1‑19 (MQ=255)
                                                                                                                                    ggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCACGAGTCGAACCTTGGTCGAAGCTACTCATCCTACCCCGCATGGGCAGAATATTTTATTGCGGATTCggt                   >  2:443002/1‑148 (MQ=255)
                                                                                                                                      tggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcg                 <  2:4479471‑M1/150‑135 (MQ=255)
                                                                                                                                       ggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgc                >  2:3898108‑M1/1‑15 (MQ=255)
                                                                                                                                       ggtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgc                >  2:3109960‑M1/1‑15 (MQ=255)
                                                                                                                                        gtggGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgcc               >  1:2912858‑M1/1‑14 (MQ=255)
                                                                                                                                         tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGaa              <  1:1352865/150‑1 (MQ=40)
                                                                                                                                          gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGGGGTAGAACCGTCTCAAACGTACCCGCAAGGGCACAATATTTAATTTCGGATTCGTTGGGAAg             >  2:3454472/1‑150 (MQ=14)
                                                                                                                                           ggggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgct            >  2:3927388‑M1/1‑11 (MQ=255)
                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttgg                                                                                                       <  1:4619564‑M1/58‑49 (MQ=255)
                                                                                                                                            gggAAGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttgg                                                                                                       >  2:4619564‑M1/1‑10 (MQ=255)
                                                                                                                                              gAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTGGGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATAGTTAATTGCGGATTAGTTGGGAAGTTCa         >  2:5139222/1‑150 (MQ=255)
                                                                                                                                               aaGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaa        <  1:5520123‑M1/150‑144 (MQ=255)
                                                                                                                                               aaGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaa        >  2:2767089‑M1/1‑7 (MQ=255)
                                                                                                                                               aaGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaa        <  1:856963‑M1/150‑144 (MQ=255)
                                                                                                                                                aGGATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaa       >  1:3417601‑M1/1‑6 (MQ=255)
                                                                                                                                                aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAgg       <  1:4908462/150‑1 (MQ=255)
                                                                                                                                                 ggATTcgaaccttcgaagtcgatgacggcagatttacagtctgctcccagtggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaag      <  1:3763139‑M1/150‑146 (MQ=255)
                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagt     <  1:649565‑M1/150‑147 (MQ=255)
                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagattta                                                                                                                        <  1:4655100‑M1/35‑32 (MQ=255)
                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagattta                                                                                                                        >  2:2240702‑M1/1‑4 (MQ=255)
                                                                                                                                                  gATTcgaaccttcgaagtcgatgacggcagattta                                                                                                                        <  1:2240702‑M1/35‑32 (MQ=255)
                                                                                                                                                   aTTcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcgggaagcggggcgcatcatatcaaatgacgcgccgctgtaaagtg    >  1:2463003‑M1/1‑3 (MQ=255)
                                                                                                                                                   aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGAc    >  2:2305965/1‑150 (MQ=255)
                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacgg                                                                                 <  2:1644442‑M1/72‑71 (MQ=255)
                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacgg                                                                                 <  2:4672874‑M1/72‑71 (MQ=255)
                                                                                                                                                    ttcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacgg                                                                                 <  2:257268‑M1/72‑71 (MQ=255)
                                                                                                                                                    ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGTGTCGAACCTTGGTCGAAGGTTCTCAACCTTCCCCCCAGTGGGAGAATATTGAATTGCGGAGTGGTTGGGGAGTTCAGCGACt   >  2:3975651/1‑150 (MQ=14)
                                                                                                                                                     tcgaaccttcgaagtcgatgacggcagatttacagtctgctccctttggccgctcgggaaccccaccacggggtaatgctttttactggcctgctcccttatcggtaagcggggcgcatcatatcaaatgacgcgccgctgtacagtgtt  >  1:4752687‑M1/1‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTT  >  NC_000913/1286935‑1287233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.