| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3740982 = | NA (NA) | 7 (0.020) | 4/264 | NT | NA | noncoding (19/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4108578 = | NA (NA) | noncoding (8/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3741136‑3740982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTG > NC_000913/4108578‑4108619 gccTCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGACATCAGGTAGGC > 2:6280347/4‑150GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 2:2640659/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 1:2261160/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 1:2746876/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 2:538664/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 1:3577340/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 2:5680349/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 1:4320966/150‑1GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGC < 1:6009201/150‑1 CATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCC < 2:2400705/150‑1 CATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCC < 2:2400401/150‑1 CATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCC < 2:2250750/150‑1 CATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCC > 1:4918046/1‑150 CATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACCCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCAGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATCTAGGCC > 2:5404845/1‑150 CATCGGCTACGGCAGCAGCCCGTATGAAACGTTTGCCGGCGATTCTCAACGCCGGAACAGGGCGCTGTCTTTATGCCAGATGCGGCGTACACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATCGCAGAAATCATGTAGGCC < 2:2909963/150‑1 ctagtcgACGTCAGCAGAATGTGTTAAACGTTTTCCGGCGTTTCTAAAAGCCGTAACAGTGCGATTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCAGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCT < 2:3569293/143‑1 ATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCT < 2:5880263/150‑1 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCCTGTAGGCCTG > 1:3440837/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:4364841/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG < 1:6080344/150‑1 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:397618/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG < 1:3033080/150‑1 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG < 2:3043416/150‑1 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTAATCCGGCCTACAAATTCTTCCAAATGCAATATATTGCAGAAATCATGTAGGCCTG > 2:2721351/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCGTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:5124530/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGGTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:1817912/1‑150 TCGGCTACGGCAGCAGCCTGTTTGAAACATTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCACATTCAATATATTGCAGAAGTCATGTAGGCCTG > 1:1453402/1‑150 CGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGA < 1:3180961/150‑1 CGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGA < 1:2521480/150‑1 GGCTACGGCAGCTGCCTGTTTGATACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCGTACAAATTCTTCGAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:6143336/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCACCGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:6333209/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAACGTCTTCCAAATTCAATCGCTTGCAGACATCATGTAGGCCTGAT > 2:4559218/1‑150 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:6084891/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:599145/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:598826/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:1292880/150‑1 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTGCCAAATTCAATATATTGCAGACATCATGTAGGCCTGAT > 2:1459623/1‑150 GGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATCCTTCCAAATTCAATATATTGCAGAACTCATGTAGGCCTGAT > 2:5678050/1‑150 TTTGACACGTTGTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTGTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:3759621/150‑1 TTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 2:4252919/150‑1 TGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCT < 1:6537824/150‑1 TTTTCCGGCGTGTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCTACATGAt < 1:1549004/150‑2 aTCCGGCCTTTCTCAACGCCGGAACAGTGCGCTTTGAATATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCATCCAAATACAATATATTGCAGAAATCATGAAGGCCTGATGCGCTACGCTTATCAGGCCTACATGAtta < 2:4861830/149‑4 TTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCTACATGATTT < 2:4627361/150‑1 CAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTACCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTG < 2:1687134/150‑1 ACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG < 2:3130575/62‑1 ACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:3136396/1‑62 ACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG > 1:3130575/1‑62 ACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTG < 2:3136396/62‑1 GCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3741136‑3740982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTG > NC_000913/4108578‑4108619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |