BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	375248 =	80 (0.890)	16 (0.210)	5/218	NT	18.8%	noncoding (319/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
*	?	NC_000913	377507 =	70 (0.920)	16 (0.210)	5/218	NT	18.8%	noncoding (173/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 122 total aligned reads displayed.

GCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCA  >  NC_000913/375109‑375385

gCATCAGGCATCTGCGCACGACTGCCGGATGCGTCGAGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAAATTGTAGGCCTGATAAGACGCGTAAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaa                                                                                                                                           >  1:1343453/1‑140 (MQ=255)

gCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaa                                                                                                                                           >  1:918189/1‑140 (MQ=37)

 cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaaa                                                                                                                                          >  2:967327/1‑140 (MQ=37)

 cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTaaa                                                                                                                                          >  2:624052/1‑140 (MQ=37)

    agacgttaatccgttatcacgagggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGc                                                                                                                                       <  2:1251197‑M1/5‑1 (MQ=255)

    agacgttaatccgttatcacgagggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGc                                                                                                                                       <  2:1251384‑M1/5‑1 (MQ=255)

         ttaatccgttatcacgagggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTAt                                                                                                                                  >  1:935542‑M1/131‑140 (MQ=255)

         ttaatccgttatcacgagggttatgatcacagctattatattgtctccagttttattggcgagcttattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTAt                                                                                                                                  >  2:876736‑M1/131‑140 (MQ=255)

         ttaatcagttatcacgagggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTAt                                                                                                                                  >  1:934775‑M1/131‑140 (MQ=255)

         ttaagccgttatcacgagggttatgaacacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTAt                                                                                                                                  >  2:875181‑M1/131‑140 (MQ=255)

          taatccgttatcacgagggttatgatcacagctgttattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATc                                                                                                                                 <  2:1590320‑M1/11‑1 (MQ=255)

          tCTGCGCACGACTGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACGGTTGGCGCGAGAATTTGTAGGCCTGATACGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTATACGCCTTATc                                                                                                                                 <  2:485845/140‑1 (MQ=255)

              cgcACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                                                             >  1:32646/1‑140 (MQ=37)

                cACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCTCGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                                           >  1:158150/1‑140 (MQ=37)

                 ttatcacgagggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTa                                                                                                                          <  2:643970‑M1/18‑1 (MQ=255)

                 aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                                          >  2:246924/1‑140 (MQ=37)

                   gACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGCGAAGTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACg                                                                                                                        >  1:644105/1‑140 (MQ=255)

                   gACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg                                                                                                                        >  1:1112475/1‑140 (MQ=37)

                   gACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg                                                                                                                        >  2:1165674/1‑140 (MQ=37)

                     cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                                                      <  1:603353/140‑1 (MQ=38)

                     cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                                                      >  2:1316751/1‑140 (MQ=38)

                        ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATgg                                                                                                                   >  2:1561237/1‑140 (MQ=40)

                          gttggcggggTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGgcg                                                                                                                 <  1:1078468/136‑1 (MQ=255)

                          ggttggggcgGGAACGCCTGATCCGGCCCACCCGTGGCGCGTGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGgcg                                                                                                                 <  2:65923/134‑1 (MQ=11)

                          gggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGgcg                                                                                                                 >  2:1257829‑M1/114‑140 (MQ=255)

                          gggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGgcg                                                                                                                 >  2:303417‑M1/114‑140 (MQ=255)

                          gggttatgatcacagctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGgcg                                                                                                                 >  2:41046‑M1/114‑140 (MQ=255)

                             tGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCgg                                                                                                              >  1:970332/1‑140 (MQ=40)

                             tGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCgg                                                                                                              <  1:967735/140‑1 (MQ=40)

                             tGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCgg                                                                                                              <  1:967327/140‑1 (MQ=40)

                               cggcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa                                                                                                            >  2:301345/1‑140 (MQ=40)

                               cggcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa                                                                                                            <  2:124473/140‑1 (MQ=40)

                                    tGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg                                                                                                       <  2:918721/140‑1 (MQ=21)

                                    tGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg                                                                                                       <  2:918776/140‑1 (MQ=21)

                                       agctattattttgtctccagttttattggcgagcatattgcctaccacgccaataaactgaatatgcgttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAg                                                                                                    <  2:1175059‑M1/40‑1 (MQ=255)

                                         gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGc                                                                                                  <  1:554501/140‑1 (MQ=40)

                                         gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGc                                                                                                  <  1:556564/140‑1 (MQ=40)

                                         gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGc                                                                                                  <  1:842053/140‑1 (MQ=40)

                                         gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGc                                                                                                  <  2:932651/140‑1 (MQ=40)

                                         gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCATGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGACGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGc                                                                                                  <  1:842052/140‑1 (MQ=255)

                                            ttATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTg                                                                                               >  2:1476270/1‑140 (MQ=40)

                                                   gCCTACGGGTGGCGCGAGAATTTGTTGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGACGGATGCGGCGTAAACGCCTAATCCGGCCTACGGATGTCGCGGGAATTAGTAGCCCTGATAAGAc                                                                                        >  2:704694/1‑140 (MQ=14)

                                                    ccTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCCGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcg                                                                                       >  2:227397/1‑140 (MQ=255)

                                                        cGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGtt                                                                                   >  1:664977/1‑140 (MQ=40)

                                                             ggCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGt                                                                              <  2:534488/140‑1 (MQ=37)

                                                              gcgcGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                                             >  1:451210/1‑140 (MQ=37)

                                                              gcgcGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                                             >  1:451266/1‑140 (MQ=37)

                                                              gcgcGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                                             >  1:552828/1‑140 (MQ=37)

                                                                   ataaaccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAgcgtcgcgtc                                                                        >  2:689499/8‑140 (MQ=255)

                                                                    gaATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa                                                                       <  1:1292412/140‑1 (MQ=34)

                                                                         tGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCAt                                                                  >  1:1405683/1‑140 (MQ=34)

                                                                           tAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCt                                                                <  2:1072190/140‑1 (MQ=34)

                                                                           tAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCt                                                                <  2:1072191/140‑1 (MQ=34)

                                                                              gCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGca                                                             <  1:703077/140‑1 (MQ=17)

                                                                                 tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCacac                                                          >  1:1679996/1‑140 (MQ=34)

                                                                                       gACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGc                                                    <  2:1679996/140‑1 (MQ=34)

                                                                                           ggcaaGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGa                                                <  1:217160/136‑1 (MQ=21)

                                                                                           gcatAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGa                                                <  1:625803/137‑1 (MQ=21)

                                                                                           cgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGa                                                <  2:739703/140‑1 (MQ=34)

                                                                                           cgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGa                                                <  2:1437924/140‑1 (MQ=34)

                                                                                            catAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGAt                                               <  1:487884/138‑1 (MQ=21)

                                                                                            catAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGAt                                               <  1:488242/138‑1 (MQ=21)

                                                                                             ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGACTTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCAGCTGCCCACGACTGCCGGATg                                              >  2:1407198/1‑140 (MQ=255)

                                                                                                 cGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGAt                                          >  1:1278785/1‑140 (MQ=37)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        >  1:347655/1‑140 (MQ=38)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        <  1:1480781/140‑1 (MQ=38)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        >  2:1045972/1‑140 (MQ=38)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        >  1:1323887/1‑140 (MQ=38)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        >  1:1323609/1‑140 (MQ=38)

                                                                                                   tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaa                                        >  2:1045976/1‑140 (MQ=38)

                                                                                                    cGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                           <  1:412814/88‑1 (MQ=33)

                                                                                                    cGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                           >  2:412814/1‑88 (MQ=33)

                                                                                                      cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATTGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACg                                     >  1:1584919/1‑140 (MQ=255)

                                                                                                       aTCAGCCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGTGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGt                                    <  2:252700/140‑1 (MQ=255)

                                                                                                           ttgataatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTg                                <  1:1394615‑M1/108‑1 (MQ=255)

                                                                                                           ggCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTg                                >  2:863484/1‑140 (MQ=255)

                                                                                                                aatagcacgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCgg                           >  1:1373335‑M1/28‑140 (MQ=255)

                                                                                                                 tGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGc                          >  1:1105732/1‑140 (MQ=255)

                                                                                                                     cACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTAc                      >  2:726800/1‑140 (MQ=255)

                                                                                                                      acgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                           <  2:1359917‑M1/49‑1 (MQ=255)

                                                                                                                      acgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAg                                                                                          <  2:1478772‑M1/50‑1 (MQ=255)

                                                                                                                       cgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                           >  1:356243‑M1/21‑69 (MQ=255)

                                                                                                                       cgactgccggatgcggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                           <  2:356243‑M1/49‑1 (MQ=255)

                                                                                                                       cGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACAt                    >  1:581692/1‑140 (MQ=255)

                                                                                                                       cGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACAt                    >  1:1436735/1‑140 (MQ=255)

                                                                                                                           tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTCGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCg                <  2:489590/140‑1 (MQ=255)

                                                                                                                           tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGCCTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCg                <  2:1615482/140‑1 (MQ=255)

                                                                                                                             ccGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGcc              >  2:1566074/1‑140 (MQ=255)

                                                                                                                             ccGGATGCGGCGAAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGGCTTGTCCGGCCTACATTTCGcc              >  2:1648191/1‑140 (MQ=255)

                                                                                                                                    cggcgtgAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       >  1:86218‑M1/8‑140 (MQ=255)

                                                                                                                                    cggcgtgAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       >  2:1449764‑M1/8‑140 (MQ=255)

                                                                                                                                    cggcgTAACCGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       <  2:1105732/140‑1 (MQ=255)

                                                                                                                                    cggcgTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       >  1:175148/1‑140 (MQ=255)

                                                                                                                                    cggcgTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       <  1:1333304/140‑1 (MQ=255)

                                                                                                                                    cggcgTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGc       <  2:413815/140‑1 (MQ=255)

                                                                                                                                     ggcgTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACTCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCa      >  1:1157469/1‑140 (MQ=255)

                                                                                                                                       cgTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGTTGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGt    >  2:640795/1‑140 (MQ=255)

                                                                                                                                         ttAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCa  >  2:1105976‑M1/3‑140 (MQ=255)

                                                                                                                                         tAAACGCCTTATCCGGCCTACGGATTGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCa  <  2:1584919/140‑1 (MQ=255)

                                                                                                                                         tAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCa  <  2:1105744/140‑1 (MQ=255)

GCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGCAGTCA  >  NC_000913/375109‑375385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.