Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,930,193 | A→G | 6.3% | L301L (TTG→CTG) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,930,193 | 0 | A | G | 6.3% | 203.8 / 4.5 | 63 | L301L (TTG→CTG) | ravA | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
Reads supporting (aligned to +/- strand): ref base A (30/29); new base G (2/2); total (32/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
CGGCTGAAAATGCCGCCCAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCG > NC_000913/3930054‑3930327 | cgGCTGAAAATGCCGCCCAGACGAATTACCGTAAAGGCTGTTTTATCGCATTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCaa < 2:14566/140‑1 (MQ=255) aaaTGCCGCCCAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCa < 2:26177/140‑1 (MQ=255) cgccCAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATttgt > 2:614127/1‑140 (MQ=255) cccAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATttgttg < 1:378907/140‑1 (MQ=255) ccAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATttgttgt > 2:1425306/1‑140 (MQ=255) cGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTAt < 1:859033/140‑1 (MQ=255) cGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTAt < 2:1091193/140‑1 (MQ=255) aCCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAAtt < 1:589537/140‑1 (MQ=255) gTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTTGCAGGCGTGACCGGTCTTCAATAAATCAATTAGTTGTTGTATCAAATTCAg > 2:504960/1‑140 (MQ=255) gTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAg > 2:311029/1‑140 (MQ=255) gTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAg > 2:1151810/1‑140 (MQ=255) tAAGTCTGTATTATCTCTTTGTTGCTGATCGAGTTGCAGGTCACTTTGAAAAATCGCGCAAACGAGAGTCAACATCCCTTGCTGTTGCAAGGCGAGACCGTTCATCAATACATCAATATGTAGAAATATCAAATTCAgca > 1:1279813/1‑138 (MQ=255) aaGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAGTACATCAATTTGTTGTTGTATCAAATTCAGGCt > 1:717350/1‑140 (MQ=255) aaGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAGTACATCAATTTGTTGTTGTATCAAATTCAGGCt > 1:717467/1‑140 (MQ=255) tGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAGTACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcg < 2:717350/140‑1 (MQ=255) tGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAGTACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcg < 2:717467/140‑1 (MQ=255) gTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcgc > 2:393638/1‑140 (MQ=255) gTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcgc > 2:884539/1‑140 (MQ=255) gTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcgc > 2:1319485/1‑140 (MQ=255) gTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTgcgc > 1:418160/1‑140 (MQ=255) gTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTAgcgc > 2:393712/1‑140 (MQ=255) ttttATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGcgcg > 2:190134/1‑140 (MQ=255) ttttATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGcgcg > 2:189950/1‑140 (MQ=255) tCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATa > 2:1389460/1‑140 (MQ=255) ttgttgCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTATGCGCGTCATACcaca > 2:746616/1‑140 (MQ=255) ttgCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGc < 1:708486/140‑1 (MQ=255) ctgGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCtt < 1:1054097/140‑1 (MQ=255) gCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGACATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCACTCTTTCAGCaaa > 2:849032/1‑140 (MQ=255) ggTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATg < 1:638458/140‑1 (MQ=255) tGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATgag < 1:92887/140‑1 (MQ=255) gTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCt < 2:1494827/140‑1 (MQ=255) tGCACTCTCGCGCCAAGGCGAGTCAACCTCCCGTGCTGTTGCCAGTCGTGACCGGTGATCAATACTTCAATTGGTAGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTAc < 2:1693068/140‑1 (MQ=255) tGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTAc < 2:1564322/140‑1 (MQ=255) cacaATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCg > 2:1318326/1‑140 (MQ=255) cacaATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCg > 2:12002/1‑140 (MQ=255) acaATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCgg < 1:621356/140‑1 (MQ=255) acaATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCgg < 1:1183561/140‑1 (MQ=255) tCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCa > 2:276120/1‑140 (MQ=255) cgcgCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCaa < 1:440148/140‑1 (MQ=255) cgcCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACa > 2:1254658/1‑140 (MQ=255) cgcCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACa > 2:587328/1‑140 (MQ=255) cGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCg < 2:84045/140‑1 (MQ=255) cGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCg < 2:139683/140‑1 (MQ=255) gAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGa < 1:918995/140‑1 (MQ=255) gTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGAcc < 2:1424223/140‑1 (MQ=255) gCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCACATTCAGGCTTTGCGCGACATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgcg < 2:1294958/140‑1 (MQ=255) gCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgcg < 2:1296402/140‑1 (MQ=255) gCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgcg < 1:129484/140‑1 (MQ=255) gCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgcg < 2:425615/140‑1 (MQ=255) gCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGgcg < 2:300944/140‑1 (MQ=255) tGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGc < 2:277148/140‑1 (MQ=255) tGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGc < 2:1678773/140‑1 (MQ=255) gCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGcc > 1:219227/1‑140 (MQ=255) gCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGcc > 2:218048/1‑140 (MQ=255) gCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGcc > 1:492832/1‑140 (MQ=255) gCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCaa > 1:266800/1‑140 (MQ=255) cGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCaat > 1:1205169/1‑140 (MQ=255) tGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCaataa < 2:450901/140‑1 (MQ=255) tGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCaataa > 1:624654/1‑140 (MQ=255) ccGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCg > 1:1266120/1‑140 (MQ=255) gTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGAt > 1:1338912/1‑140 (MQ=255) gTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGAt < 1:1103668/140‑1 (MQ=255) tcatcaATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATc > 2:882979/1‑140 (MQ=255) catcaATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCg < 1:1373752/140‑1 (MQ=255) | CGGCTGAAAATGCCGCCCAGACGAATTACCGTTAAGGCTGTTTTATCGCTTTGTTGCTGCTGGAGTTGCAGGTGACGTTGCACAATCGCGCCAAGGCGAGTCAACATCCCTTGCTGTTGCCAGGCGTGACCGGTCATCAATACATCAATTTGTTGTTGTATCAAATTCAGGCTTTGCGCGTCATACCACAGGCAATCTTTCAGCAAAATGAGATCTACCGGGGCAACAGCACTGCGACCGCTAAAAAAGGCGCTGGCCTGCAATAATCGGATCG > NC_000913/3930054‑3930327 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |