New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3304504NA (NA)6 (0.020) 6/266 NT NA noncoding (1/29 nt) REP241 (repetitive extragenic palindromic) element; contains 1 REP sequences REP241 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3304536 NA (NA)intergenic (+81/+37) yhbW/mtr putative luciferase‑like monooxygenase/tryptophan transporter of high affinity

AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3304350‑3304504
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaCAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGTC  <  NC_000913/3304536‑3304390
                                                                                                                                                                                                                                                                                                              
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          >  1:1397422/1‑150
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          >  1:206002/1‑150
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          <  2:357883/150‑1
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          <  2:357455/150‑1
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          <  2:357445/150‑1
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          >  2:247362/1‑150
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          >  2:247230/1‑150
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          <  2:1837327/150‑1
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTC                                                                                                                                                          >  1:4429157/1‑150
 ACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCC                                                                                                                                                         >  2:5291064/1‑150
 ACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCC                                                                                                                                                         <  1:1378445/150‑1
 ACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCC                                                                                                                                                         >  2:1378079/1‑150
 ACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCC                                                                                                                                                         >  2:1377894/1‑150
   CGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTA                                                                                                                                                       <  2:1550161/150‑1
   CGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTA                                                                                                                                                       >  1:2346630/1‑150
   CGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTA                                                                                                                                                       <  1:2313279/150‑1
   CGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTA                                                                                                                                                       <  1:5086535/150‑1
   CGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGGGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTA                                                                                                                                                       >  2:5119288/1‑150
    GACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTAC                                                                                                                                                      <  1:1962512/150‑1
    GACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTAC                                                                                                                                                      >  1:4701652/1‑150
     ACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGACGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACA                                                                                                                                                     >  2:3440920/1‑150
     ACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACA                                                                                                                                                     <  1:4383762/150‑1
     ACGCCGATGAGATTATGGTCAACGGGCAGATATTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACA                                                                                                                                                     >  2:3400205/1‑150
                      GTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACACAATGCCTGATGCGCTT                                                                                                                                    >  2:2913849/1‑150
                                 GATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACAGAGACCTGATGCGCTTCGCTTATCAGGT                                                                                                                        <  2:3478480/150‑1
                                   TTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACATAGGCCTGATGCGCTTCGCTTATCAGGTCT                                                                                                                      <  1:2706209/150‑1
                                          CCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAG                                                                                                                <  1:5468798/150‑1
                                              CAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACA                                                                                                            <  1:2913849/150‑1
                                                                TTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGACATTTC‑‑TGCTGCCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGG                                                                                       <  1:4540935/150‑1
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGcg     >  2:2326678/1‑148
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTG     >  2:4457261/1‑150
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTG     <  2:3672080/150‑1
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTG     >  2:2808244/1‑150
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTG     >  1:4350881/1‑150
                                                                                                                                                     CCTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTG     <  1:5028841/150‑1
                                                                                                                                                      CTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGG    >  2:5255395/1‑150
                                                                                                                                                      CTACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGG    >  2:4454376/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  1:872015/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  1:4011660/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   <  2:5067379/150‑1
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  2:4297956/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  2:2824673/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   <  1:2242622/150‑1
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  1:3365096/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   <  1:3241551/150‑1
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   <  1:2440904/150‑1
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGT   >  1:4311476/1‑150
                                                                                                                                                       TACACAATGCCTGATGCGCTTCGCTTATCAGGGCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCCACAACTCTTCCTGAACATCCATCGCCAGCTCACACGACTGCAGCCGCGCCTGGTGG  >  2:4934980/1‑149
                                                                                                                                                        ACACACTGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGTC  <  2:3342347/150‑1
                                                                                                                                                        ACACAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGTC  >  2:1854044/1‑150
                                                                                                                                                                                                                                                                                                              
AACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCTGGCGATGGATGTTAAGGAAGAGTTGTTGGGATAGTGTGTCTTAACGCGGGAAGCCTTATCCGAGCTGGCAACGCTGTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3304350‑3304504
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaCAATGCCTGATGCGCTTCGCTTATCAGGTCTATGTAGGACAGCGTTGCCAGCTCGGATAAGGCTTCCCGCGTTAAGACACACTATCCCAACAACTCTTCCTTAACATCCATCGCCAGCTCAAACGAATGCAGCCGCGCCTGGTGGTC  <  NC_000913/3304536‑3304390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.