Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,229,177 | A→C | 8.8% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,229,177 | 0 | A | C | 8.8% | 599.4 / 6.6 | 287 | intergenic (+112/+261) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
Reads supporting (aligned to +/- strand): ref base A (51/167); new base C (22/9); total (94/193) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.17e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 291 total aligned reads displayed.
ACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATG > NC_000913/2229029‑2229326 | tggtggTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑ggg < 2:6399559/150‑1 (MQ=255) gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑Cg‑ggggg > 1:5266612/1‑150 (MQ=255) gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGggc‑gg < 1:7908418/150‑1 (MQ=255) gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGggc‑gg < 2:6908876/150‑1 (MQ=255) gtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGggc‑gg < 1:2863628/150‑1 (MQ=255) gACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGggc‑gggc > 2:1120895/1‑148 (MQ=255) aCTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCa > 2:1514918/1‑150 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CG‑GGGGGG‑GGccca > 2:7807960/1‑148 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GC‑GGGGGG‑GGcccaa > 2:4477426/1‑147 (MQ=255) ggagTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATc < 1:4151959/147‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCCGCCTGTTGCGCTCCTGTCATGGGCATTGCTGCATATACTCACTGGCGCAAGGAGCGC‑G‑CG‑gggggg‑gggggccc > 1:2624352/1‑144 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATc < 2:7571445/150‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATc < 2:5027420/150‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATc < 1:1325096/150‑1 (MQ=255) gCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATcg > 1:4246991/1‑150 (MQ=255) tATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATcgccg < 2:3684106/150‑1 (MQ=255) tttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCACTagccgcc > 2:750504/1‑150 (MQ=255) aaGATGATATTTTAAAATAAATTAATGTCATCAGGTCCGAAAATAACTAGAATATTTAAGTCTCTCATCATGTTGCGCTCCTGTCATGTGCAATGCTTCAGATACTCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCAAACgccgccccc > 1:6629440/1‑150 (MQ=255) aGATGATATTTTAAAATTAATTCATGGCATCAGGTCCGAAAATAACGAGAATATTACAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGccc < 1:9102740/150‑1 (MQ=255) gatgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGcccc < 1:9223225/150‑1 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCACCTGTCATGTGCATTGCTTCATAAAATCACTGGCGCAAGGAGCGC‑G‑GA‑GCGGGCGGGCCAACCACcccccccccc > 2:4885707/1‑150 (MQ=255) tatatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CT‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTg < 1:594500/149‑1 (MQ=255) atatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGG‑CG‑GGGGGG‑GGCCCA‑CGCccccccccccccc > 1:2124092/1‑147 (MQ=255) atatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCCATCCCCCCCCCCCCCCGc > 2:9128263/1‑150 (MQ=38) atatTTTAAAATTAATGAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGc < 2:6953545/150‑1 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCa < 1:8387184/150‑1 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGATAATAACGAGAATATTTCAGTCTCTCTTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCAccc < 2:3852495/150‑1 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCTTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCACCCCCTGCAccc > 1:10087770/1‑150 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GG‑GGGGGG‑GGGCAAAAACCCCCCCCCCCCCCAccc > 1:333236/1‑150 (MQ=255) tttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCACCCCCAGCAccc > 1:302191/1‑150 (MQ=255) aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCggg < 2:223538/150‑1 (MQ=255) ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGG‑GGCCCCTAGCCGCCCCCCCCCCCCCCCCCCGGcg > 2:432490/1‑149 (MQ=255) ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGct < 2:4092700/150‑1 (MQ=255) ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGct < 2:7944853/150‑1 (MQ=255) ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCAATAGccgcccccccccgcccccccccgcg > 1:6851257/1‑145 (MQ=255) aattaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCG‑GGGGGG‑GGCCAAACCACCCCCCCCCCCCCAcccccccccca > 2:2904461/1‑144 (MQ=255) attattGTCATCTGGTCCTAAAATAACTAGAATTTTTCAGTCTCTCTTCCTGTTGCGCTCCTTTCATGTGAATTGATTAATATAATCACTGGCGCAAGGAGGGC‑G‑CT‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTg < 2:2610371/150‑1 (MQ=21) ttaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GA‑GGGGGC‑GGCCCAAAGCCCCCGCCCCCACCCCCCCCCGGcacagg > 1:1712356/1‑145 (MQ=255) taatGTCATCTGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGc < 2:9662687/150‑1 (MQ=255) atGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑g > 1:3685400/1‑104 (MQ=255) caGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CG‑GGGGGC‑GGCCCAAAGCCGCCGCCCCCCCCACCCCCCGGCACAGGCG‑CACaaaaa > 2:6352831/1‑149 (MQ=25) caGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCCAACGCCGCCGCCCCCAGCACCCCCCGGCGCGGGCG‑GACaaaaa > 2:6352938/1‑149 (MQ=25) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GG‑GGGGGG‑GGGCCCGCCCCCCCCCCCCCCCCACCCCCCCCCCCGGGCG‑AGCaaaaaacc > 1:7982163/1‑146 (MQ=255) ccGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑GG‑GGGGGG‑GGGCCAAAGCCCCCCCCCCCCCCCCCCCCCCCCCCAGGCG‑ACCaaaaacaccc > 1:7226858/1‑144 (MQ=255) ccGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATcgccg < 2:1653011/150‑1 (MQ=255) gAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCCATCGCCGCCCCCCCCAGCCCCCCCCCGCGCTGGCGCAACaaaacgccccg > 2:10124606/1‑143 (MQ=25) gAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCCCCCCCGGGCTCTGGCG‑AACAAAAACGCCGCt > 2:8478222/1‑150 (MQ=255) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGt < 2:6695654/150‑1 (MQ=255) gagaATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCAGCAACCCCCGGCTATGGCG‑AACAAAAAAGCCGCGGCGCGGTGc > 2:3436666/1‑150 (MQ=21) ctatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTc < 2:6720933/149‑1 (MQ=255) atatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCAGTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTc < 2:5581928/150‑1 (MQ=255) atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTCCATATAATCACTGGCGCACGGAGCGC‑G‑CC‑GGGGGC‑GGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCgg < 2:8796637/150‑1 (MQ=255) atTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATATGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCgg < 2:6005747/150‑1 (MQ=255) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 1:6308374/150‑1 (MQ=255) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 2:4219207/150‑1 (MQ=255) cAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 2:5242443/150‑1 (MQ=255) gTCTCTCATCGTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAACACTGGCGAATGGAGCGC‑G‑CA‑GGGGGC‑GGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 1:10225172/150‑1 (MQ=18) gTCTCTCAGCCGGGTGCGCTCCGGTCATGTGCATTGCTTCAGCTAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCCGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 2:10024429/150‑1 (MQ=17) gTCTCTAATCCTGTTGCGCCCCTCTCATGTGAATTGCTTAATATAAACACTGGCCCAAGGAGCGC‑G‑CT‑GGGGGC‑GCCAAATCGCCGCCCCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 1:4765437/150‑1 (MQ=17) ctcATCCTGTGGCGCTCCTGTCTTGTGAATTGCTTCATATAATCACTGGCGCACGGAGCGC‑G‑CT‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:9561980/150‑1 (MQ=18) tcATCCTGCTGCGCTCCTGTCATGTGCATTGCTTCATATAATCAGTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa < 1:11463/150‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 2:8344443/150‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 2:7380154/150‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 2:1721545/150‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 2:6890879/150‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAAGCAGTGGCGCACGGCGCGC‑G‑CT‑GGGGGC‑GCCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 1:4808619/150‑1 (MQ=17) tGTTGCGCTCCTGTCATGTGCATTGCTTAATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTa < 2:1962384/150‑1 (MQ=255) gTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAc < 2:7129948/150‑1 (MQ=255) tGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCg < 2:1307880/150‑1 (MQ=255) cgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CC‑GGGGGC‑GGCCAAACGCCCCCCCCCCCAGCACCCCCCGGCGCAGGCG‑CACAAAAACGCCCCGGCGCGGGGCCCCCGGCGTAACCCCTACCGCTAccccg > 2:6511822/1‑147 (MQ=17) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc < 2:5768213/150‑1 (MQ=255) ccTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCgg < 1:1514918/150‑1 (MQ=255) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg < 2:1823515/150‑1 (MQ=255) tGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc < 1:8814541/150‑1 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 1:2142951/150‑1 (MQ=255) cggtgCAGTGCGTCAGAGACTCACTGGCGCCCGGAGCGC‑G‑CC‑GGGGGC‑GGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑ACCAAAATCGCCGCTGCGCGGGGCCCTCGGCTTCTCCCTTACGGCGACCGGGTCGGGCGCGa < 2:8907746/148‑1 (MQ=11) aTGTGCATTGCTTCATATACTCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa < 2:9449583/150‑1 (MQ=255) aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑TGGGGC‑GGCCAAACGCCGCCGCCCCCAGCCCCCCCCGGCTATGGCG‑AACAAAAACCCCGCGGCGCGGTGGCCACGGCATAACCCATAACGCTACCCGGTCGGGcgcgc > 2:2504346/1‑149 (MQ=255) aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGGCCAACGCCGCCCCCCCCCGCACCCCCCGGCGCAGGGG‑GCCAAAAAAGCCGCGGCGCGGGGCCCACGGGGGATCCCCGAAGGCGACCCGGGGGGGcgcgc > 2:9862290/1‑149 (MQ=12) aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa < 2:972547/150‑1 (MQ=255) tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGG‑GGCCAAACGCCGCCCCCCCCAGCACCCCCGGGCTCTGGCG‑CACAAAATCCCCGCTGCGCCGTGCCCTCGGCTTATCCCATAACGCGACCCGGTCGGGcgcgcg > 2:3289100/1‑148 (MQ=17) tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑ACCAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:9051928/150‑1 (MQ=255) tgtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 2:191608/150‑1 (MQ=255) tgCATTGCTTCATATAATCAGTGGCGAAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 1:4728962/150‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 2:6795639/150‑1 (MQ=255) gCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTa < 2:5479274/150‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:6634453/150‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAAACGCCCCCCCCCCCAGCACCCCCCGGCTCAGGCG‑AAAAAAAAAGCCCCGGCGCGGTGCCCACGGCGTGTACCGTAACGCAAACCGGTCGGGCGCGCGGGAACa > 2:10101488/1‑150 (MQ=9) cTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc < 1:5672492/150‑1 (MQ=40) ttCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCG‑AACAAAAAACCCGCGGCCCGGTGCCCACGGCGTATCCCATAAGGCTAACCGGTCGGGCGCGAGGTAACATacc > 2:10289735/1‑150 (MQ=14) tCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt < 2:7248947/150‑1 (MQ=39) tCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt < 1:1855658/150‑1 (MQ=39) ggCGCCTGGAGCGC‑G‑CC‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGccc < 1:8626612/150‑1 (MQ=12) cgcAAGGAGCGC‑G‑CAGGGGGGC‑GCCCAAAC‑CCCCCCCCCCCACCACCCCCCGGCGCAGGCG‑AACAAAAAAGCCCCGGCGCGGGGGCCCCCGCGGAACACAAAAGGCGACCCGGGCGGGCGCGAGGGAACAAACCAGTAAAACCCGccccc > 2:3232206/1‑148 (MQ=2) aGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:4663737/150‑1 (MQ=32) ggAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCACGGGCTCTGGCG‑AACAAAATCGCCGCTTCGCTGTGCCCTCGGCTTATCCCTTACTGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 1:4954180/150‑1 (MQ=255) aGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcac < 1:974349/150‑1 (MQ=32) c‑g‑cA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATcc < 1:5454848/150‑1 (MQ=32) a‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtg > 2:4850231/1‑150 (MQ=32) a‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtg > 2:52904/1‑150 (MQ=32) | ACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑G‑CA‑GGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCG‑AACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATG > NC_000913/2229029‑2229326 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |