New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3857685	79 (1.330)	3 (0.050)	3/260	NT	3.7%	coding (720/1494 nt)	yidJ	sulfatase/phosphatase superfamily protein
	?	NC_000913	= 3857715	83 (1.490)					coding (690/1494 nt)	yidJ	sulfatase/phosphatase superfamily protein
Rejected: Frequency below/above cutoff threshold.

TGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3857530‑3857685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaccgCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGGGTT  <  NC_000913/3857715‑3857568                                                                                                                                                                                                                                                                                                                  TGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCTTTGATTACGCGTCCGTTTTGGTCTTCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTC                                                                                                                                                             <  2:796089/149‑1  GTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGGTAAGGCATTGATGACCCGTCCGATTTGGTCATCACCAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCA                                                                                                                                                            >  1:602353/1‑149   TGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCGACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGGGATAAAGCCCGTCAT                                                                                                                                                           <  2:259142/149‑1   TGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCAT                                                                                                                                                           >  1:287361/1‑149    GCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATC                                                                                                                                                          >  1:403806/1‑149      GCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTACACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCAC                                                                                                                                                        <  1:176252/149‑1                                             CGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGAT                                                                                                                 <  1:912368/149‑1                                              GTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGAACCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATG                                                                                                                <  1:48357/149‑1                                                    TCACGTTGCTCTGGCGGTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGC                                                                                                          <  1:1009800/149‑1                                                                                                                                                     caaCACCGCTTCTGGGCGCAGGCGATGCCATGGCCAGTCGGTGATTACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATAC         <  1:564585/146‑1                                                                                                                                                      ATCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTTATGACTTTGTTCATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAACATACG        >  1:682553/1‑149                                                                                                                                                      ATCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACG        <  1:868546/149‑1                                                                                                                                                       TCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCCCCAGCCGCTCTATTTTGCGTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGT       >  2:810285/1‑149                                                                                                                                                       TCACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGT       <  2:849811/149‑1                                                                                                                                                         ACCGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGG     >  1:376798/1‑149                                                                                                                                                           CGCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGGGT   >  2:827287/1‑149                                                                                                                                                            GCTTTTGGGCTCAGGCGATGCCATCGCCAGTCGGTGATTTCGGGCTTTATCACCATCCGCTATATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGGGTT  <  1:958806/149‑1                                                                                                                                                            GCTTATGGGCTCAGGCGATGCCATCGTCAGTCGTTTATGACGGGCTTTATCACCATCCTATCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGGGTT  <  1:568709/149‑1                                                                                                                                                                                                                                                                                                                  TGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCCGATTTGGTCATCAACAAAGTCATTACAGGCAAAATAGAGCGGATGGTGATAAAGCCCGTCATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3857530‑3857685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaccgCTTATGGGCGCAGGCGATGCCATCGCCAGTCGGTGATGACGGGCTTTATCACCATCCGCTCTATTTTGCCTGTAATGACTTTGTTGATGACCAAATCGGACGGGTCATCAATGCCTTAACGCCAGAGCAACGTGAAAATACGTGGGTT  <  NC_000913/3857715‑3857568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.