New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	511333 =	51 (0.860)	3 (0.050)	3/266	NT	5.9%	coding (47/2505 nt)	copA	copper transporter
	?	NC_000913	511361 =	46 (0.810)					coding (19/2505 nt)	copA	copper transporter

AGATGCGTCATAACCCGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGT  >  NC_000913/511188‑511481                                                                                                                                                  |                                                                                                                                                     aGATGCGTCATAACCCGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGAc                                                                                                                                                   <  1:318363/149‑1 (MQ=255)   aTGCGTCATAACCCGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCg                                                                                                                                                 >  1:210199/1‑149 (MQ=255)   aTGCGTCATAACCCGCTTGTTTGATGCTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACCCATCCGCCTGCTCAACATCCGTACGCTGTTCTAGACTTTCTTTCACGCGTTTAACGCAGTGACCg                                                                                                                                                 >  1:104619/1‑149 (MQ=255)        tCATACCACGCTTGTTTTATTGTTTAGATAATCTGTTATGCCCTGGCAGTACCTTTAACGTGCGCTTCAGTGATAGACACTTCCGCCTGCTCAACATCCGTAAGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGAACGCAGGa                                                                                                                                            <  2:186502/149‑1 (MQ=255)          aTAACCCGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACa                                                                                                                                          <  2:630592/149‑1 (MQ=255)               ccGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCg                                                                                                                                     >  1:729406/1‑149 (MQ=255)               ccGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCg                                                                                                                                     >  1:730560/1‑149 (MQ=255)                   ttGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGGTTAACGCAGTGACCGCAGGACAGGCCGTCCa                                                                                                                                 <  2:558701/149‑1 (MQ=255)                     gTTTGATGGTTTCGATCAGCTGTTCTGCACTCGCAGTCCCGGTAACGTGCGCTTGAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTGCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAgg                                                                                                                               <  2:818789/149‑1 (MQ=255)                       ttacggacgtttacccgcctggtttataaatttcttgaccttccccttgctggaaggtttaacctttatcacagccagtcaaaactgtcttaaaggagtgttttatgtcacaaactatcgaccTGACC‑CTGGACAGGCCGTCCAGGGTc                                                                                                                            >  1:140307‑M1/124‑149 (MQ=255)                            ggTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAggg                                                                                                                        >  1:763901/1‑148 (MQ=255)                             gTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTc                                                                                                                       <  2:735291/149‑1 (MQ=255)                             gTTTCGATCAGCTGTTCTGCACTGGCAGTCCAGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCAGGACGCTGTTCAAGACTTTCTTTCACGCGTTTATCGCAGTGCCCGCAGGACAGGCCGTCCAGGGTCAGGTc                                                                                                                       >  2:1007245/1‑149 (MQ=255)                               ttCGCTCAGCTGTTCTGCACTGGAAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGa                                                                                                                     >  1:724126/1‑149 (MQ=255)                               ttCGATCAGCTGGTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCATCATCAGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGa                                                                                                                     <  2:593645/149‑1 (MQ=255)                                tttacccgcctggtttattaatttcttgaccttccccttgctggaaggtttaacctttatcacagccagtcaaaactgtcttaaaggagtgttttatgtcacaaactatcgaccTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGAt                                                                                                                    >  1:1025878‑M1/115‑149 (MQ=255)                                  gATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCAGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTAAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAg                                                                                                                  >  1:634465/1‑149 (MQ=255)                                   aTCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGt                                                                                                                 >  2:340487/1‑149 (MQ=255)                                   aTCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGGTTCACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGt                                                                                                                 >  1:865133/1‑149 (MQ=255)                                   aTCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCACAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCAGTCCAGGGTCAGGTCGATAGt                                                                                                                 >  1:135146/1‑149 (MQ=255)                                        ccttgattattaatttcttgaccttccccttgctggaaggtttaacctttatcacacccagtcaaaactgtcttaaaggagtgttttatgtcacaaactatcgaccTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTtgtg                                                                                                            >  1:902758‑M1/107‑149 (MQ=255)                                           ttCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACa                                                                                                         >  1:784393/1‑149 (MQ=255)                                                cACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGGGCAAGACGTTCTTTCACGCGATTAACGCAGTGACCGAAGTACAGGCCGTCGAGGGTCAGGTCGATAGTTTGTGACATaaaa                                                                                                    <  2:169532/149‑1 (MQ=255)                                                 aCTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAac                                                                                                   >  2:983962/1‑149 (MQ=255)                                                 aCTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACCCAGTCCCCGCAGCACTGCCCGGCAGGGGGCCGTGCGTTAGTTTGTGCCTTaaacc                                                                                                   >  1:358918/1‑147 (MQ=255)                                                     gCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTc                                                                                               >  2:186962/1‑149 (MQ=255)                                                        gTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGAGCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCtt                                                                                            <  1:282508/149‑1 (MQ=255)                                                        gTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTACACGCGTTTAACGCAGTGACCGCAGGTCAGGCCGTCCAGGGTCAGGGCGATAGTTTGTGACATAAAACACTACtt                                                                                            >  2:925873/1‑149 (MQ=255)                                                            cGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAg                                                                                        >  1:344566/1‑149 (MQ=255)                                                             ggTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGa                                                                                       <  1:235486/149‑1 (MQ=255)                                                             ggTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGGTTGTGACATAAAACACTCCTTTAAGa                                                                                       <  1:629153/149‑1 (MQ=255)                                                                            aGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCt                                                                        <  1:943765/149‑1 (MQ=255)                                                                              tGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCtgg                                                                      >  1:741032/1‑148 (MQ=255)                                                                               gATAGACACATCCGCCTGCTCAACATACGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCtgtg                                                                     <  2:724126/149‑1 (MQ=255)                                                                                   gACCCATCCGCCTGCTCACCATCCGGACGCTGTTCAAGACTTTCTTTCACGCGGTTAACGCAGTGACCGCAGGACAGTCCTTCCAGGGTCAGGTCGATAGTTTGTGACAAAAAACCATCCTTTAAGACAGATTTGACTGGCTGTGATaa                                                                 >  1:205774/1‑149 (MQ=255)                                                                                    acacATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATaaa                                                                >  2:1024416/1‑149 (MQ=255)                                                                                         tCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTa                                                           <  2:763901/149‑1 (MQ=255)                                                                                           cGCCTGCTCAAAAACCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCATGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTaaa                                                         <  1:583981/149‑1 (MQ=255)                                                                                                   cAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGCCATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAg                                                 >  1:977150/1‑149 (MQ=255)                                                                                                   cAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAg                                                 >  1:265855/1‑149 (MQ=255)                                                                                                   cAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTGTGTGACATAAAACGCTCCTTTAAGACAGTTTAGACTCGCTGTGAGTAAGGTTAGCCCTTCGAg                                                 >  1:950855/1‑149 (MQ=255)                                                                                                    aaCATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTCACATAAAACACTCCTTTAAGACACTTATGACTGGCTGTGATAAAGGTTAAACCTTCCacc                                                >  1:471609/1‑147 (MQ=255)                                                                                                     aCATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGCACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGATGTTATAAAGGTTAAAACTTACAGCa                                               >  1:119394/1‑149 (MQ=255)                                                                                                       aTCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAg                                             <  1:340487/149‑1 (MQ=255)                                                                                                               gCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGt                                     >  1:141651/1‑149 (MQ=255)                                                                                                                     cAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGaa                               <  2:344566/149‑1 (MQ=255)                                                                                                                     cAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGAAATAAAACACTCCTTTAAGACAGTTTTGACTGGCTCTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGaa                               >  1:333655/1‑149 (MQ=255)                                                                                                                       ataCTTTCTTTCACGCGTATAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATCGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAAt                             <  2:604725/147‑1 (MQ=255)                                                                                                                       aGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGCTCAAGAAAt                             >  2:553774/1‑149 (MQ=255)                                                                                                                           tttctttcACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTTATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATtaat                         >  2:544060/1‑149 (MQ=255)                                                                                                                           tttctttcACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATtaat                         >  1:544700/1‑149 (MQ=255)                                                                                                                                ttcACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAAcc                    >  1:510540/1‑149 (MQ=255)                                                                                                                                      cgTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCgg              <  1:983962/149‑1 (MQ=255)                                                                                                                                          tAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTaa          <  2:293039/149‑1 (MQ=255)                                                                                                                                            aCGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTaaaa        >  1:976584/1‑149 (MQ=255)                                                                                                                                                 gTGAACGCAGGTCAGGCCGTCCAGGGTCATGTAGATAGTTTGTCACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGTGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCg   <  2:471609/149‑1 (MQ=255)                                                                                                                                                  TGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGt  <  1:586657‑M1/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGATGCGTCATAACCCGCTTGTTTGATGGTTTCGATCAGCTGTTCTGCACTGGCAGTCCCGGTAACGTGCGCTTCAGTGATAGACACATCCGCCTGCTCAACATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGT  >  NC_000913/511188‑511481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.