New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729475 =	38 (0.640)	3 (0.050)	3/256	NT	8.8%	intergenic (‑31/+141)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	= 4168363	27 (0.490)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu

GAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAG  >  NC_000913/2729328‑2729622                                                                                                                                                    |                                                                                                                                                    tttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcacactacacgaaaatatcacgcaacgcgtgataagcaAt                                                                                                                                                    <  2:400071‑M1/2‑1 (MQ=255)   gaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAttt                                                                                                                                                  >  2:187361/1‑149 (MQ=32)   gaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAttt                                                                                                                                                  >  1:376661/1‑149 (MQ=32)       ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgt                                                                                                                                              <  2:1025343/149‑1 (MQ=17)       gtgctcacacagattgtctgatagaaagtgaaaagcaacgcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt                                                                                                                                              >  1:36574‑M1/142‑149 (MQ=255)                                                     agcggATTCTAACCCCTGTTACCGCCGTGATAGGGCGGTGTCCTGGGCCTCTATACGAACGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCtt                                                                                                <  2:613094/146‑1 (MQ=1)                                                                                      ggCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa                                                               <  1:79592/149‑1 (MQ=11)                                                                                        gggTGTCCTGGGTCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt                                                             <  1:421839/148‑1 (MQ=17)                                                                                        gggTGTCCTGGGCCTCTAGACGAAGGGGTCACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt                                                             <  2:457183/148‑1 (MQ=17)                                                                                        cGGTGTCCTGGGCCTCTAGACGAAGGTGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt                                                             <  2:58795/149‑1 (MQ=17)                                                                                        cGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt                                                             <  2:413822/149‑1 (MQ=32)                                                                                              ccTGGTCCTCTAGACGAAGGGGACAATAAAATTCCTTATAACGCGTAGCGTGATATTATCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt                                                       <  1:1029328/149‑1 (MQ=11)                                                                                               cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCCTTGCGTGATATTTTCGTGTTGGGTGAGCTTTCATTAATAGAAAGAGAACTGACTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACTCCTTGCTATTCACtttt                                                      >  1:564363/1‑149 (MQ=11)                                                                                                  ggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat                                                   <  2:367696/149‑1 (MQ=35)                                                                                                   gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc                                                  >  1:36700/1‑149 (MQ=35)                                                                                                     ctctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg                                                <  1:730328/149‑1 (MQ=37)                                                                                                     ctctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg                                                >  2:148608/1‑149 (MQ=37)                                                                                                       gaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAATTTCGTGTATTGTGAGCTTTCATTAATAGAAAGAGAACGGCATTATTCTCTGCAGCCTAACTCCCAACGCGTAAACGCCTTGCTAAGAACTTTTCATCAgaa                                              <  2:601257‑M1/104‑2 (MQ=255)                                                                                                         aGACGAAGGGGACACGAATATTGCTTATCACGCGGTGCGTGATATTTTAGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATAAGACaa                                            >  1:864006/1‑149 (MQ=255)                                                                                                         aGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACaa                                            <  2:160121/149‑1 (MQ=37)                                                                                                          gACGAAGGGGCCACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACTGCATTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCTTCAGACAAt                                           <  2:107305/149‑1 (MQ=255)                                                                                                            cGAAGGGGACACGAAAATTGCATATCACGCGATGCGTGATATTTTCGTGTAGGAACAGCTTTCAATAATACAAAGCGAACGGCCTTAATCTCTTCAGCCTCACACCCAACGCGAAAACGCCTGGCTATTCACGTTTCATCACACAATcg                                         >  2:713183/1‑148 (MQ=11)                                                                                                              aaGGTGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACACCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt                                       <  2:449384/149‑1 (MQ=255)                                                                                                                ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt                                     <  1:187361/149‑1 (MQ=37)                                                                                                                  ggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGa                                   <  2:186922/149‑1 (MQ=37)                                                                                                                  ctacacgaaaatatcacgcaacgcgggattagcaATTTTCGTGGAGGGTGAGCTTTCATTAATACAACGCGCACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATAAGACattctgtctgg                                   <  1:173417‑M1/115‑5 (MQ=255)                                                                                                                     cacGTAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCGCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCa                                <  2:950755/149‑1 (MQ=255)                                                                                                                     cacGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCTGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCa                                <  1:985608/149‑1 (MQ=37)                                                                                                                      acGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGATTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTAGCTATTCACTTTTCATCAGAAAATCTGTGTGAGCAc                               >  1:87731/1‑149 (MQ=255)                                                                                                                       cgaaaatatcacgcaccgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGACTTATTCTCTTCAGCATCACTCCCAACGCGTAAACGGCTTGCTTTTCACTTTCTATCAGACAATATGTGTGAGCACt                              <  1:610734‑M1/120‑1 (MQ=255)                                                                                                                       cGAAAATTGCTTATCACGCGGTGCGTGATATTTTCGTGGAGGGTGAGCTTTCAGTAATAGATAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAAGGCCGTGCTATTCACTTTTCATCAGCCAAACTGTGTGAGCAcg                              >  1:342000/1‑148 (MQ=11)                                                                                                                        gAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCACCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTg                             >  2:588896/1‑149 (MQ=38)                                                                                                                        gAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTg                             <  2:165092/149‑1 (MQ=38)                                                                                                                        gAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTg                             >  2:55839/1‑149 (MQ=38)                                                                                                                        gAAAATTGCTTATCACGCGTTGCGTGATAATTTCTTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACTGCCTTATAATCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTCTGAGCAcag                             >  1:520676/1‑147 (MQ=11)                                                                                                                            aTTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCaaa                         <  2:595029/149‑1 (MQ=39)                                                                                                                            aTTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCaaa                         <  1:964574/149‑1 (MQ=39)                                                                                                                             ttGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAg                        <  2:830737/149‑1 (MQ=39)                                                                                                                             ttGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGATTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAg                        <  2:834702/149‑1 (MQ=255)                                                                                                                               gCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTa                      <  2:166924/149‑1 (MQ=39)                                                                                                                               gCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTa                      <  1:523619/149‑1 (MQ=39)                                                                                                                               aaatATCACGCAACGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTAACTTTTCATCAGAGAATCTGTGTGAGCACTGCAAAGTa                      >  1:783812/4‑149 (MQ=14)                                                                                                                                     cACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttc                >  1:867949/1‑149 (MQ=39)                                                                                                                                       cgcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttctt              <  1:202905/149‑1 (MQ=39)                                                                                                                                        gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCttt             <  2:805224/149‑1 (MQ=39)                                                                                                                                                 gATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATCCACTTTTCCTCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaaggtaagg    <  1:1004625/149‑1 (MQ=255)                                                                                                                                                  ttatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAagga   <  1:92541/148‑1 (MQ=39)                                                                                                                                                   tatTTTTGTGTAGTGTGAGATTTCATTAATAGAATGCGAACGGACTTATTCTCTTTAGCCTGACTCCCAACGCGTAATCTGGTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAtggag  <  1:466259/149‑1 (MQ=14)                                                                                                                                                    |                                                                                                                                                    GAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAG  >  NC_000913/2729328‑2729622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.