New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 16653	NA (NA)	4 (0.070)	4/262	NT	NA	noncoding (1267/1345 nt)	IS186	repeat region
	?	NC_000913	= 16691	NA (NA)					noncoding (1305/1345 nt)	IS186	repeat region

CTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCA  >  NC_000913/16588‑16836                                                                                                        |                                                                                                                                                  cTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACt                                                                                                      >  2:124729/1‑149 (MQ=32)    gAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTTAAGAACGCGAGGCATCGTCATAACGAGGCACCGAGGCGTCGCATTCATCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTccc                                                                                                   >  1:272671/1‑149 (MQ=255)       cTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACACAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGCGGCACCGAGGCGTCGCCTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCCCTCCccgc                                                                                                >  1:715504/1‑149 (MQ=255)       cTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCccgc                                                                                                >  1:635494/1‑149 (MQ=35)          aCAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGATGCACCGAGGCGTCGCATTCTTCATATGGTTCAACCCTTAAGTTAGCGCTTATGGGATACCTCCccgccgg                                                                                             >  2:904073/1‑148 (MQ=255)            tggTGCCCATTCGTGGGACAGTATCCCTGACAGCCTACAAATCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTGGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                                                                           <  1:207633/148‑1 (MQ=255)              gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTCTGTGATAACTCGCCGCCGTTGca                                                                                         >  1:74408/1‑148 (MQ=255)               tGGCCTTTCGTGGGACCGTATCCCTGACACCCTACAAAACGCAATTGAAGAACGCGATGCATCGTCTTAACGATGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGctc                                                                                        <  1:480243/149‑1 (MQ=14)                   cATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTAc                                                                                    >  1:936864/1‑149 (MQ=255)                     ttCGGGGGACAGTATCGCTGACAGCCTACAATACGCTATTGAAGAACGCGAGGCATCGTCTTAACGAGGCAGCGATGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCGCTTACTc                                                                                  <  2:186356/149‑1 (MQ=14)                         tGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGAt                                                                              >  1:627087/1‑149 (MQ=255)                         ggggACAGAATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCCTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGAt                                                                              <  1:429125/148‑1 (MQ=255)                            gACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTGGCTCTTACTCGGATTCg                                                                           >  1:374932/1‑149 (MQ=255)                             aCAGTATCCCTGACAGCCTACAACACGCAATTGAAGACCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTACAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGt                                                                          >  2:821673/1‑149 (MQ=255)                               aGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTaa                                                                        >  1:230100/1‑149 (MQ=255)                                    acctgcaaGCCTCCAACACGCAATTGACGCACGCGAGGCATCCGCTTAACGAGGCTCCGAGGCGTCGCATTCTTCTGATGGTTCATCCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTTCTCGGATTCGTAAGCCGt                                                                   <  2:673520/142‑1 (MQ=17)                                     ccTGACAGCCTACAAACCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTg                                                                  <  1:784549/149‑1 (MQ=255)                                       tGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGaa                                                                <  1:550473/149‑1 (MQ=255)                                        gACAGCCTACAAAACGCAATTGACCAACGCGTGTGATCTTCTTAACTAGGCACCGAGGGGTCGCATTCTTCAGATGGGTCAACCCTTACGTTAGCGCTTATTGGAGCACTGCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGaaa                                                               <  1:574960/149‑1 (MQ=18)                                           aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGCGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACa                                                            <  2:418886/149‑1 (MQ=255)                                              cTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCAGTGAAAACAGCa                                                         >  1:275198/1‑149 (MQ=255)                                               tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCaa                                                        >  1:521313/1‑149 (MQ=255)                                               tACAAAACGCAATTGAAGAACCCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTACAGATGGTTCCCCCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGGAAGCCGAGAAAACAGCac                                                        >  2:358095/1‑148 (MQ=18)                                                aCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGCGGCACCGACGCGTCGCATACATCAGAGGGTTCACCCCTTAAGATCGCGCTAATGGGAGCACCCCCCGCCGTTGCTCTTAATCGCATTCGTAAGACGTCAAAACACCAAc                                                       >  1:579411/1‑149 (MQ=17)                                                  aaaaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTGGTAAGCCGTGAATACAGCAACCt                                                     >  1:107794/1‑149 (MQ=255)                                                    aaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTcc                                                   >  1:444618/1‑149 (MQ=255)                                                     aCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCg                                                  >  2:639923/1‑149 (MQ=255)                                                     aCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGAGGGTTCAACCCTTAAGTTAGCGCTTATGGGATCAGTCCCCGCAGTTGCTCTGACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCg                                                  >  2:320318/1‑149 (MQ=255)                                                      cGCAATTGAAGAACGCGAGGCATCGGCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGt                                                 <  2:927829/149‑1 (MQ=255)                                                         aaTTTAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCTTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGTGATCTCTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTg                                              <  1:190097/149‑1 (MQ=255)                                                         aaTTGAAGAACGCGAGGCATCGTCTTATCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTg                                              <  1:915406/149‑1 (MQ=255)                                                         aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGATCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTg                                              >  1:650720/1‑149 (MQ=255)                                                              aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAg                                         <  1:1019216/149‑1 (MQ=255)                                                               agaaCGCGAGGCATCGTCTTACCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTGAAGTTAGCGCTTATGGGATCACTCCCCGCAGTTGCTCGTACTCGGATGCGTAAGCCGTGCAAACAGCCCCCGCCGGCGGGCCCGt                                        >  1:903886/1‑149 (MQ=17)                                                                   cgcgATGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCgg                                    <  2:238703/149‑1 (MQ=255)                                                                   cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTAACCGCCGTTGCTCTTAATCGGATTCGTAAGACGTGAAAACAGCAACCTCCGTCTGGCCAGTGCgg                                    >  2:21699/1‑149 (MQ=21)                                                                     cgtttcATCGTCTTAAAGCGGCACCGAGGCGTCGCATTCTTCAGTTGGTTCAACCCTTAAGTTAGCGCTTATTGGATCACTCACCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTTGCCACTTCGGAt                                  <  2:275479/144‑1 (MQ=25)                                                                      gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtg                                 <  2:652471/149‑1 (MQ=255)                                                                           aTCGGCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAAc                            <  2:552314/149‑1 (MQ=255)                                                                              gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTc                         <  1:181411/149‑1 (MQ=255)                                                                                cTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGGTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTcac                       <  2:936864/149‑1 (MQ=255)                                                                                 ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTcaca                      >  2:125061/1‑149 (MQ=255)                                                                                    aCGAGGCACCGAGGCGTCGCTTTCTTCTGATGGTTCATCCCTTCAGTTAGCGCTTCTGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTGCGGATGGGACCCTCACagag                   <  2:345096/149‑1 (MQ=255)                                                                                    aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACagag                   <  1:124729/149‑1 (MQ=255)                                                                                    aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGGTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACagag                   <  1:267737/149‑1 (MQ=255)                                                                                           aCCGAGGCGTCGCTATCTTCAGAAGGTTCAACCCTTAAGTTAGAGGTTATGGGATCACTCCCCGCCGTTTCTCTTAATCGGATTCGTAAGCCGTGAAACCAGCAACCGCCGTCTGGCCAGTTCGGATGTGCACCTCACAGAGGTAtttt            >  2:943548/1‑149 (MQ=37)                                                                                            ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTATGCCGTGAAAACAGCAAGCTCCGTCTGGCCAGTGCGGATGTGAACCTCACAGAGGTCtgtta           >  2:229730/1‑148 (MQ=255)                                                                                            ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTtc           <  2:521313/149‑1 (MQ=255)                                                                                              taGGCGTCGCATTCGTCAGATGGGGCAACCCTTATGTTAGCGCGTATGGGAGCACTCCCAGCCGGTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGCTGTGAACCTCACAGAGGGCTTTtctc         <  2:903886/148‑1 (MQ=255)                                                                                              gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTtctc         <  2:282192/149‑1 (MQ=255)                                                                                              gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTAGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTtctc         <  1:192240/149‑1 (MQ=255)                                                                                                     cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCTTCTGGCCAGATCGGATGTCAACCTCACAGAGGTCTATTCTCGTTACCa  >  1:54243/1‑149 (MQ=255)                                                                                                        |                                                                                                                                                  CTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCA  >  NC_000913/16588‑16836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.