| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 11 (0.190) | 15 (0.290) | 14/244 | NT | 52.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 17 (0.320) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913/1209475‑1209767 | aggcagatgcgtttgcggcattccacccccactgaaggattactgattgctcaataccaccaatcataacccgtaaagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt < 2:863565‑M2/5‑1 (MQ=255) agatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:880436‑M2/141‑149 (MQ=255) ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa > 1:996919/1‑149 (MQ=255) ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCAGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa > 1:869160/1‑149 (MQ=255) gatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa > 2:932322‑M2/140‑149 (MQ=255) aaGCCTTTGACAGTTCCGGGTATGATTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg < 2:832644/149‑1 (MQ=255) cggcattccacccccactgaatgactactgattgctcaataccaccaatcataaccggtatagcaatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa < 2:22857‑M2/20‑1 (MQ=255) ggcattccccccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgagttttgctccttctccccacccaaCGTTTATGAAAATGAAGAAAt > 1:108167‑M2/129‑149 (MQ=255) ggcattccacccccactgaatgattactgattgctcaataccacgaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttgtcccaaaccaaGCTTTATGAAAATGAACAAAt > 2:902408‑M2/129‑149 (MQ=255) ccAGTTCAGGGTATTCATCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa < 1:674055/149‑1 (MQ=255) cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc < 1:539242/149‑1 (MQ=255) tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:915719/149‑1 (MQ=255) actgattgctcaataccaccaatcataaccagtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc > 1:915870‑M2/104‑149 (MQ=255) ctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 1:173332‑M2/47‑1 (MQ=255) aaaaaGCGGCACCATTGCATTTCAGCCAGACTGTTTGAGTAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTATATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:131116/1‑149 (MQ=255) cACCATTGCATTTCAGCCAGCCAGTTGGCGGAGTGGCTGAAGGCCAAGCAACCGGGACACCAACAGGTAATGCAGAGCAATCTCCCAAAACAACGTTTATCAAAATGAAGAAATAACAAGCAAAATGCATCATTCCTGCTTTTACCAgg > 2:769183/1‑149 (MQ=255) attaccaccaatcataaccggtatctctatgataccggtgcgtcctaatctcgccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAACCAAATGGCATCATTCCTGCTTTTACCAggg < 1:32871‑M2/57‑1 (MQ=255) aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:855188/149‑1 (MQ=255) ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACAAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 2:898945/1‑149 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 1:982434‑M2/83‑149 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCAGAAGGCCACGGAACCGGGACACCAACATGTAATGCAGAGCCTTCCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:4024/149‑1 (MQ=255) tcGGAGTGGCTGAAGGCCACGGAACAGGGACACAAACAGGTAATGCAGAGCCTTCTCACAAACCAACGTTTATGAAAATGAAGAAATAAAAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 2:375996/148‑1 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctacttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcg > 1:795286‑M2/64‑149 (MQ=255) accggtgcgtcctaatgtagccgtagctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCTTCATTCCTGCTTTTACGATGGGGATTTAACATGCTTATTGGCTATGTACGCGTa > 1:196195‑M2/60‑149 (MQ=255) cACGGAACCGGGACACCAAGAGCTAATGCAGAGCCTTCTCCCAAACCAACCTTTATGAAAATGAACAAATAACAAGCAAATGGCAGCATTACTGCTTTTACCAGGGGGTTTTAACAAGCTTATTGGCTATGAACTCGTAACAACAAATg > 1:241217/1‑149 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAtt > 1:819905/1‑148 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 1:932322‑M2/101‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa > 1:46779‑M2/49‑149 (MQ=255) cagggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:937566/147‑1 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 1:519887/149‑1 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAAGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCTGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg < 2:996919/149‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 1:601690‑M2/34‑149 (MQ=255) attgagttttgctccttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTTTTGGAGATGTACGCGTATCAACAAATGACCAGAACACAGCTCgacca > 2:902624‑M2/30‑147 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCCCAGGGGGATTTAACATGCTTATTCGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:79279‑M2/16‑149 (MQ=255) cttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGAGTATTGGCTATGTACGCGAATCAACAACTGACCAGACCACAGAGCTACACCGT‑ATGCGCagacc > 2:673286‑M2/16‑147 (MQ=255) aaCGATTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAATGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGAGCTCAGCTGTGCAGGATGc > 1:183353‑M2/3‑149 (MQ=255) cGTTTATGAAAATTAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAATTGACCACAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa < 1:769183/149‑1 (MQ=255) | TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913/1209475‑1209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |