New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3198857 =	44 (0.740)	4 (0.070)	4/268	NT	9.1%	coding (785/2841 nt)	glnE	fused deadenylyltransferase/adenylyltransferase for glutamine synthetase
	?	NC_000913	3198892 =	37 (0.640)					coding (750/2841 nt)	glnE	fused deadenylyltransferase/adenylyltransferase for glutamine synthetase

TCATGTTGCGCAGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATCCAGCACTTTAATCAGCCGCTGCC  >  NC_000913/3198744‑3199034                                                                                                                                                     |                                                                                                                                               tCATGTTGCGCAGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCAGCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCgcgc                                                                                                                                                <  1:11761/149‑1 (MQ=255)  aacgcaggatggcttcgtctatcgcgtggatatgcggctgcgtccgtttggcgaaagtggcccgctggtgctgagctttgccgcgttggaagattattaccaggagcaggggCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGcc                                                                                                                                               >  1:407867‑M1/113‑149 (MQ=255)   aTGTTGCGCAGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGccc                                                                                                                                              <  2:463564/149‑1 (MQ=255)    tGTTGCGCAGCGACTGAATCACGCTGAAATCGATGTAACGAGGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGcccc                                                                                                                                             <  2:160060/149‑1 (MQ=255)          gcAGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATACTCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTcc                                                                                                                                       >  2:195842/1‑149 (MQ=255)            aGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTg                                                                                                                                     >  1:192643/1‑149 (MQ=255)                aCTGAATCACGATGAAATCCATGTAACGACTGAAAACAAACGGGCTAAGCATCGCACGCAACTCGTTAGCTTAGACGCCTTCGATATCGCCCATAATCCGCGCCTTGACAATCGCGTAACGCTCCCAGTCGCTCCCCTGCTCCTGGtaa                                                                                                                                 <  2:593402/149‑1 (MQ=255)                  tGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGtaata                                                                                                                               >  2:826802/1‑149 (MQ=255)                     tatcgcgtggatatgcggctgcgtccgtttggcgaaagtggcccgctggtgctgagctttgccgcgttggaagattattaccaggagcaggggCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGc                                                                                                                                          <  2:59459‑M1/42‑1 (MQ=255)                     tatcgcgtggatatgcggctgcgtccgtttggcgaaagtggcccgctggtgctgagctttgccgcgttggaagattattaccaggagcaggggCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGc                                                                                                                                          >  1:59459‑M1/94‑135 (MQ=255)                       cACGCTGAAATCGATGTAACGCCGGATAACATACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGTCGCCTTCGCTATCGCCCTTAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCtt                                                                                                                          <  2:266088/149‑1 (MQ=255)                          gCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTCACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGGAATAATCTTccc                                                                                                                       >  1:980634/1‑148 (MQ=255)                           cTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCaa                                                                                                                      <  1:847076/149‑1 (MQ=255)                            tGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAAc                                                                                                                     >  1:46994/1‑149 (MQ=255)                              aaaTCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAAcgc                                                                                                                   <  1:370082/149‑1 (MQ=255)                                 tCGATGTACAGACGGAAAACCAACGTGCGCAGCATCGCACGAAACTCTTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCACAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGc                                                                                                                <  1:492570/149‑1 (MQ=255)                                        aaCGACGTAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACTATCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTc                                                                                                         <  1:527316/149‑1 (MQ=255)                                        aaCGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTc                                                                                                         >  2:468097/1‑149 (MQ=255)                                        aaCGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTc                                                                                                         >  2:486077/1‑149 (MQ=255)                                         acgactGAAATCAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCa                                                                                                        <  2:376882/149‑1 (MQ=255)                                          cgacgGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAg                                                                                                       <  1:133075/149‑1 (MQ=255)                                          cgacgGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAg                                                                                                       >  1:137889/1‑149 (MQ=255)                                              ggAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCACCGCGGCAACGCTCAGcccc                                                                                                   >  1:66929/1‑149 (MQ=255)                                                    caaacGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCggg                                                                                             >  1:833783/1‑149 (MQ=255)                                                        cGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCAc                                                                                         >  2:809259/1‑149 (MQ=255)                                                            cgcAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTc                                                                                     <  1:916755/149‑1 (MQ=255)                                                                   tCGCACGCAACTCGTTAGAATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCTAAGCTCAGCACCAGCGGGCCACTTTCGCCAAAc                                                                              <  2:541750/149‑1 (MQ=255)                                                                           aaCTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAg                                                                      >  2:50747/1‑149 (MQ=255)                                                                                       tAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCCCTTTCGCCAAACGGACGCAGCCGCATATCCAc                                                          >  1:739861/1‑149 (MQ=255)                                                                                        aGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCAcg                                                         <  2:192643/149‑1 (MQ=255)                                                                                         taCGCCTTCTCTAGCGCCAATAATCAGCGCCTTGACCATCGCGTAACGCTCCCCGACGCGCCCCTGCTCCTGGTAATAATCATCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCAcgc                                                        <  2:595737/148‑1 (MQ=255)                                                                                           cGCCTCCGCTATCGCCCCTAATCCGCGCCTTGCCCATCGCGTAACGCTCCCAGTCGCGCCCCTGCCCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGa                                                      <  1:159377/149‑1 (MQ=255)                                                                                                    tATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCTGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAg                                             <  2:67551/149‑1 (MQ=255)                                                                                                    tATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTACTGGTAATAATCGTCAACCGAGGCAAAGCTCAGCTCCAGCGGGCCCCTTTCGCCAAACGGACGCAGCCGCCTATCCCCGCGATAGCCgcac                                             >  1:928803/1‑146 (MQ=255)                                                                                                      tCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGcc                                           >  2:521477/1‑149 (MQ=255)                                                                                                           gcaggggcgcgactgggagcgttacgcgatggtcaaggcgcgCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATa                                                    <  2:59459‑M2/93‑1 (MQ=255)                                                                                                           gcaggggcgcgactgggagcgttacgcgatggtcaaggcgcgCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATa                                                    >  1:59459‑M2/43‑135 (MQ=255)                                                                                                                tCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATCATCATCCAACGCGGCAAAGCGCAGCACCCGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCgtt                                 <  2:54893/149‑1 (MQ=255)                                                                                                                tCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCCCTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCgtt                                 >  2:503538/1‑149 (MQ=255)                                                                                                                tCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCgtt                                 <  1:486077/149‑1 (MQ=255)                                                                                                                ggcgcgactgggagcgttacgcgatggtcaaggcgcgCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCgtt                                 >  1:407867‑M2/38‑149 (MQ=255)                                                                                                                        ttGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATc                         <  1:826802/149‑1 (MQ=255)                                                                                                                                  cgTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATCCAGCACTTTa               <  2:137889/149‑1 (MQ=255)                                                                                                                                        gCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGCCGCAGCCGCATATCCACGCGATAGCCGAAGCCATCCTGCGGTGGTTGATCCAGCACTGTAATCAGc         >  1:351084/1‑149 (MQ=255)                                                                                                                                        gCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCGCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATCTCCCCGCGAGAGACGAAGCCATCCTGCGTTGGTTGATCCCGCACTTTAATCAGc         >  1:66890/1‑149 (MQ=255)                                                                                                                                          tCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCACAGCTCCGCAACAGCCGGCCACTTTCGCCAAACGGCCGCAGCCGCAGATCCACGCGATAGTCGAAGCCTTCCTGCGTTGGGTGATCACGCACATTAATCAGCCg       >  1:95588/1‑149 (MQ=255)                                                                                                                                          gtcaaggcgcgCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATCCAGCACTTTAATCAGCCg       <  2:407867‑M2/138‑1 (MQ=255)                                                                                                                                               gTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCATAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATCCAGCACTTTAATCAGCCGCTGcc  <  1:164443/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TCATGTTGCGCAGCGACTGAATCACGCTGAAATCGATGTAACGACGGAAAACAAACGGGCGCAGCATCGCACGCAACTCGTTAGCATAGACGCCTTCGCTATCGCCCATAATCCGCGCCTTGACCATCGCGTAACGCTCCCAGTCGCGCCCCTGCTCCTGGTAATAATCTTCCAACGCGGCAAAGCTCAGCACCAGCGGGCCACTTTCGCCAAACGGACGCAGCCGCATATCCACGCGATAGACGAAGCCATCCTGCGTTGGTTGATCCAGCACTTTAATCAGCCGCTGCC  >  NC_000913/3198744‑3199034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.