New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4534771536 (0.990)9 (0.020) 5/268 NT 1.7% intergenic (‑96/‑20) yjhZ/yjhR pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor
?NC_000913 = 4534785 510 (0.970)intergenic (‑110/‑6) yjhZ/yjhR pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor
Rejected: Frequency below/above cutoff threshold.

CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534619‑4534771
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG  <  NC_000913/4534785‑4534637
                                                                                                                                                                                                                                                                                                              
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCACGACCCGGTAAATAATTCTGTGGAACTGCCCACGAGTAAAG                                                                                                                                                          >  1:7149406/1‑150
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG                                                                                                                                                          <  2:5928830/150‑1
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG                                                                                                                                                          >  1:8537254/1‑150
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG                                                                                                                                                          >  1:165722/1‑150
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATGTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG                                                                                                                                                          >  1:7149281/1‑150
 CAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGG                                                                                                                                                         <  1:7918303/150‑1
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTTTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        >  2:4338113/1‑150
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        >  1:5683568/1‑150
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        >  1:3696639/1‑150
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        <  2:3817465/150‑1
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        <  2:8218680/150‑1
  AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        >  1:1268387/1‑150
  AAAACACATATCATTGCTTACGTAAATAGATATCAACACTCATAACCTGCGTCATTTGTTGACATTGGCCAATTGTATATCGCTAGCAAGTGTATGAACTCCCAGCAATACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT                                                                                                                                                        <  1:3188768/150‑1
   AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG                                                                                                                                                       >  2:153921/1‑150
   AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG                                                                                                                                                       >  1:1497207/1‑150
   AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG                                                                                                                                                       <  2:2941308/150‑1
                TGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGG                                                                                                                                          <  1:6768896/150‑1
                   TGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCA                                                                                                                                       <  2:9020836/150‑1
                   TGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCA                                                                                                                                       <  2:7437825/150‑1
                    GACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC                                                                                                                                      <  2:7953007/150‑1
                    GACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC                                                                                                                                      <  1:7431150/150‑1
                                         TCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACA                                                                                                                 <  2:3751282/150‑1
                                         TCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACA                                                                                                                 <  2:1824899/150‑1
                                                                                                                     TAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC                                                                                                                                      >  1:811666/1‑53
                                                                                                                     TAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC                                                                                                                                      <  2:811666/53‑1
                                                                                                                                                     GGTGACCGCCTGAGCGGCCACCTTTTATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT     <  2:5117361/150‑1
                                                                                                                                                     GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT     <  2:4710983/150‑1
                                                                                                                                                     GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT     <  1:146634/150‑1
                                                                                                                                                     GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTAGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT     <  2:4710745/150‑1
                                                                                                                                                      GTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTC    >  2:3394677/1‑150
                                                                                                                                                       TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA   >  2:3719990/1‑150
                                                                                                                                                       TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA   >  2:3720050/1‑150
                                                                                                                                                       TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA   >  1:944526/1‑150
                                                                                                                                                       TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA   <  1:2716027/150‑1
                                                                                                                                                       TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTGACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA   <  2:2796652/150‑1
                                                                                                                                                        GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG  <  2:2846515/150‑1
                                                                                                                                                        GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG  <  1:8725608/150‑1
                                                                                                                                                        GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG  <  1:8163898/150‑1
                                                                                                                                                                                                                                                                                                              
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534619‑4534771
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG  <  NC_000913/4534785‑4534637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.