| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4534771 | 536 (0.990) | 9 (0.020) | 5/268 | NT | 1.7% | intergenic (‑96/‑20) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor |
| ? | NC_000913 | = 4534785 | 510 (0.970) | intergenic (‑110/‑6) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4534619‑4534771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG < NC_000913/4534785‑4534637 CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCACGACCCGGTAAATAATTCTGTGGAACTGCCCACGAGTAAAG > 1:7149406/1‑150CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG < 2:5928830/150‑1CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG > 1:8537254/1‑150CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG > 1:165722/1‑150CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATGTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAG > 1:7149281/1‑150 CAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGG < 1:7918303/150‑1 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTTTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT > 2:4338113/1‑150 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT > 1:5683568/1‑150 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT > 1:3696639/1‑150 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT < 2:3817465/150‑1 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT < 2:8218680/150‑1 AAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT > 1:1268387/1‑150 AAAACACATATCATTGCTTACGTAAATAGATATCAACACTCATAACCTGCGTCATTTGTTGACATTGGCCAATTGTATATCGCTAGCAAGTGTATGAACTCCCAGCAATACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGT < 1:3188768/150‑1 AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG > 2:153921/1‑150 AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG > 1:1497207/1‑150 AAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG < 2:2941308/150‑1 TGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGG < 1:6768896/150‑1 TGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCA < 2:9020836/150‑1 TGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCA < 2:7437825/150‑1 GACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC < 2:7953007/150‑1 GACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC < 1:7431150/150‑1 TCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACA < 2:3751282/150‑1 TCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACA < 2:1824899/150‑1 TAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC > 1:811666/1‑53 TAAATAATTCTGTGTAACTGCCCACGATTAAAGGTGACCGCCTGAGCGGCCAC < 2:811666/53‑1 GGTGACCGCCTGAGCGGCCACCTTTTATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT < 2:5117361/150‑1 GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT < 2:4710983/150‑1 GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT < 1:146634/150‑1 GGTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTAGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGT < 2:4710745/150‑1 GTGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTC > 2:3394677/1‑150 TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA > 2:3719990/1‑150 TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA > 2:3720050/1‑150 TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA > 1:944526/1‑150 TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA < 1:2716027/150‑1 TGACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTGACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCA < 2:2796652/150‑1 GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG < 2:2846515/150‑1 GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG < 1:8725608/150‑1 GACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG < 1:8163898/150‑1 CCAAAACACATCGCATTGCTGACGTAAATAGATATCACCAATCAAAACCTGCGTCATTTGTTGACAATGGCCAATTGAATATCGCGAGCAAGTGTAAGAACTCCCAGCAAGACCCTGTAAATAATTCTGTGTAACTGCCCACGATTAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4534619‑4534771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgACCGCCTGAGCGGCCACCTTTAATCGTGGGCAGTTACACAGAATTATTTACAGGGTCTTGCTGGGAGTTCTTACACTTGCTCGCGATATTCAATTGGCCATTGTCAACAAATGACGCAGGTTTTGATTGGTGATATCTATTTACGTCAG < NC_000913/4534785‑4534637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |