| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3592563 | 69 (1.330) | 3 (0.060) | 3/194 | NT | 4.4% | intergenic (‑238/+161) | ugpB/livF | sn‑glycerol‑3‑phosphate ABC transporter periplasmic binding protein/branched‑chain amino acid ABC transporter ATPase |
| ? | NC_000913 | = 3598495 | NA (NA) | noncoding (99/99 nt) | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATgccggatgcggcgtaaacgccttatc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3592433‑3592563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < NC_000913/3598495‑3598334 AAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGC < 1:1065052/140‑1AAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGC < 2:582838/140‑1 AGATAGTAAGGTGTCAGAAAGATGCCAAGGCGGTGACGGCGTGGGTGAGGGAAAAAGGGAGATGGGGCACGGATAAGCGGGAAAATATAGTAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCG < 2:1126870/140‑1 AGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCG < 2:936893/140‑1 AGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCG < 2:814932/140‑1 AGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCG < 2:814517/140‑1 GTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGAGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAAAATAGAAGGTCTGAATCAAACTCTACAGATTGCTCAACGTTTCATGCCGCATGCGGCGTA > 2:698648/1‑140 TAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAATGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAA > 2:1136568/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:1219026/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:281251/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:385175/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:385420/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:566746/1‑140 TCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTT > 1:80309/1‑140 GAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATC < 1:135880/140‑1 TAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCA < 2:585492/104‑1 TAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCA > 1:585492/1‑104 AAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCA > 2:499646/1‑140 GATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAG > 2:864977/1‑140 GATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAG > 2:431120/1‑140 GCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCG < 1:236153/140‑1 GCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCG < 2:265586/140‑1 GCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCG < 2:265593/140‑1 GTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTG > 1:150885/1‑140 AACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTG < 1:619967/140‑1 TTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATCAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGT > 1:116988/1‑140 TTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGT > 1:853789/1‑140 TATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < 1:79193/140‑1 TATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < 1:79105/140‑1 TATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < 1:525293/140‑1 TATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < 1:51782/140‑1 AAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATgccggatgcggcgtaaacgccttatc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3592433‑3592563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcatGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAGATCCAAAGAAATCAGTAAATTGCAACACACATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATATCACTTTTGAAATCAAACTTGACGATTAACACTTCTCCCAGCCGCCCTGTTGTGCCGTA < NC_000913/3598495‑3598334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |