| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,776,388 | G→T | 8.5% | M1M (ATG→ATT) † | yfjY → | CP4‑57 prophage; putative DNA repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,776,388 | 0 | G | T | 8.5% | 147.8 / 3.4 | 47 | M1M (ATG→ATT) † | yfjY | CP4‑57 prophage; putative DNA repair protein |
| Reads supporting (aligned to +/- strand): ref base G (19/24); new base T (2/2); total (21/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
TTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGAC > NC_000913/2776256‑2776526 | ttGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAAc < 2:138815/140‑1 (MQ=255)ttGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAAc < 2:135070/140‑1 (MQ=255) gCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCa > 2:396322/1‑140 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATccc > 1:14301/1‑140 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATccc > 2:414453/1‑140 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATccc > 2:242676/1‑140 (MQ=255) aCGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCcac > 1:428999/1‑140 (MQ=255) cctgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa < 2:723170/140‑1 (MQ=255) cctgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa < 2:260453/140‑1 (MQ=255) cctgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa < 2:175977/140‑1 (MQ=255) ctgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGac < 1:750317/140‑1 (MQ=255) tgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGaca > 2:56473/1‑140 (MQ=255) tgcctCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGaca > 2:56455/1‑140 (MQ=255) tCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGTGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCgg < 2:855271/140‑1 (MQ=255) tCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCgg < 2:854599/140‑1 (MQ=255) tCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCgg < 2:827032/140‑1 (MQ=255) aCCGAATGCGATGCCATGTCGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTa < 1:386912/140‑1 (MQ=255) ccGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATTATGGAACAGTCACTCATCCCACAGACACCGGTAc > 1:1172073/1‑140 (MQ=255) ccGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATTATGGAACAGTCACTCATCCCACAGACACCGGTAc > 1:1171626/1‑140 (MQ=255) tGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGAc > 1:1063517/1‑140 (MQ=255) gCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCAc > 1:813409/1‑140 (MQ=255) tATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTa > 1:514252/1‑140 (MQ=255) tACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTaaaa > 2:555471/1‑140 (MQ=255) ccGCCTGACGGATTACGCTCTGCAGCACCCTGAATCCAGCCCCATAATGCGCATCATTGATTAAGGAGACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcg < 2:723300/140‑1 (MQ=255) cTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCcaca < 1:1025119/94‑1 (MQ=255) cTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCcaca > 2:1025119/1‑94 (MQ=255) tGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCt > 1:650849/1‑140 (MQ=255) gggATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTaa < 2:411708/140‑1 (MQ=255) cgcccgccagccCCCCGCAGCCCGCCCCATGAGGCGCATTAGTCATAAAGGATCCCCATGAGGGACCAGTCCCTCAGCCCTCCGACCCCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCATCACgctgct < 2:800052/133‑1 (MQ=255) cGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgct < 2:14301/140‑1 (MQ=255) aaTCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGTCACCGGTACTTCCACTGAACGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGcgcg > 2:738934/1‑140 (MQ=255) gcgcCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAg > 1:739694/1‑140 (MQ=255) gcCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGc < 1:400419/140‑1 (MQ=255) ccATTATGCGCATTATTGATTAAGGATACTCATTATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCg < 2:1172073/140‑1 (MQ=255) ccATTATGCGCATTATTGATTAAGGATACTCATTATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCg < 2:1171626/140‑1 (MQ=255) ccATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCg < 2:507143/140‑1 (MQ=255) ccATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCg < 2:543882/140‑1 (MQ=255) ccATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCg < 1:69620/140‑1 (MQ=255) gcgcATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAtt < 2:784721/140‑1 (MQ=255) cgcATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTc > 1:255590/1‑140 (MQ=255) cgcATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTc > 1:665020/1‑140 (MQ=255) attattGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCAcc > 2:375850/1‑140 (MQ=255) attattGATTAAGGATACTCATGATGGAACAGTCAATCATCACACAGAGACCGGTACGTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCAcc < 2:456680/140‑1 (MQ=255) tattGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCTGTACTTCCACTTACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTc < 2:355947/140‑1 (MQ=255) gATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACt < 1:21600/140‑1 (MQ=255) tAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAg > 2:1040338/1‑140 (MQ=255) aaGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAgg < 1:957702/140‑1 (MQ=255) tgatgGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGAc < 1:603930/140‑1 (MQ=255) | TTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGAC > NC_000913/2776256‑2776526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |