Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,423,531 T→G 8.7% noncoding (12/120 nt) rrfF ← 5S ribosomal RNA of rrnD operon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,423,5310TG 8.7% 102.9 / 2.7 41noncoding (12/120 nt)rrfF5S ribosomal RNA of rrnD operon
Reads supporting (aligned to +/- strand):  ref base T (20/17);  new base G (2/2);  total (22/19)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGAT  >  NC_000913/3423392‑3423669
                                                                                                                                           |                                                                                                                                          
aGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACt                                                                                                                                            >  2:852523/1‑140 (MQ=37)
            gAGCCTTTTGTTTTATTTGATGTCTGGCATTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaa                                                                                                                                >  2:536326/1‑140 (MQ=12)
            gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGGCaa                                                                                                                                >  2:536349/1‑140 (MQ=17)
              gCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAAt                                                                                                                              <  1:1200451/140‑1 (MQ=17)
                    tGTTTAATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTACTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt                                                                                                                        <  1:761779/140‑1 (MQ=255)
                         tATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACGACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt                                                                                                                   <  1:331802/140‑1 (MQ=255)
                                tGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAGCTGCCGa                                                                                                            >  2:429818/1‑140 (MQ=255)
                                        aGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAc                                                                                                    <  1:66495/140‑1 (MQ=255)
                                                   ctcGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAGATTCACGTTAAAAgtgg                                                                                         >  2:744885/1‑140 (MQ=17)
                                                   ctcGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAgtgg                                                                                         <  1:408737/140‑1 (MQ=255)
                                                    tcGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTATAAACTGCCGAACATTATACAAAAAAttggg                                                                                        >  2:591229/1‑139 (MQ=14)
                                                     cGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTACTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAgtggtg                                                                                       <  2:475990/140‑1 (MQ=255)
                                                           gggAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGAc                                                                                                                                  >  1:951206/1‑91 (MQ=32)
                                                                aCCGCACACTACCATCGGCGCTACTGCGTTTCACTTCTGTGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAAGTCTTGTCTTATCTGCAGAAATTTATGCTAAATAGTTGTTCTGTTACGCag                                                                            >  2:1181186/1‑140 (MQ=14)
                                                                aCCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCag                                                                            >  1:697542/1‑140 (MQ=255)
                                                                      cacTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTc                                                                                                                            >  1:1224687/1‑86 (MQ=33)
                                                                           ccATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTgg                                                                 >  2:952468/1‑140 (MQ=255)
                                                                            cATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTggg                                                                >  1:1112121/1‑140 (MQ=255)
                                                                               cGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGAc                                                             >  2:348043/1‑140 (MQ=255)
                                                                                 gcgcTACTGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCAGCCGAACTTGAACCTAAAATGAGGTGCTGAAACCCAGAGTCGAACAGGGGAcca                                                           >  2:617421/1‑139 (MQ=21)
                                                                                   gcTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAACAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCa                                                         <  2:684500/140‑1 (MQ=255)
                                                                                   gcTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCa                                                         <  2:945160/140‑1 (MQ=255)
                                                                                    cTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCAc                                                        <  2:440170/140‑1 (MQ=255)
                                                                                     tACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAAt                                                                                                                              >  1:1035031/1‑69 (MQ=35)
                                                                                     tACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCAcc                                                       <  2:195443/140‑1 (MQ=255)
                                                                                       cGGCGTTTCACATCTGAGTTCGGCATGGGGTCTGGTGGGACCACCGCGCTACTGCCGCCAGAAAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAACGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCt                                                     <  2:1225264/140‑1 (MQ=255)
                                                                                                            ggtaTGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCa                                >  2:632350/4‑140 (MQ=255)
                                                                                                             gCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCaa                               <  2:724201/140‑1 (MQ=255)
                                                                                                              cATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAAc                              <  1:952468/140‑1 (MQ=255)
                                                                                                              cATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAAc                              <  2:907069/140‑1 (MQ=255)
                                                                                                              cATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAAc                              <  1:580356/140‑1 (MQ=255)
                                                                                                                        ggTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCatat                    >  2:506694/1‑140 (MQ=255)
                                                                                                                        ggTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCatat                    >  2:36553/1‑140 (MQ=255)
                                                                                                                          tGGGACCACCGCGCTCCGGCCGCCCGACAATTTCGTTGCGCATCTGCCGCACGGGCACCGCAACAGTGCTGCAGATACCCAGATTCGAACTGGGGACCTCACCCTTCCCAAGGGTGCGCGCGCCCAGCTGAGcccgcgcc                  >  2:37021/1‑134 (MQ=255)
                                                                                                                           gggACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAg                 <  1:223660/140‑1 (MQ=255)
                                                                                                                                 accGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAACAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCt           <  2:305723/140‑1 (MQ=255)
                                                                                                                                 accGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCt           <  2:305736/140‑1 (MQ=255)
                                                                                                                                  ccGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCACGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTa          <  1:664406/140‑1 (MQ=255)
                                                                                                                                   cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaa         >  1:533365/1‑140 (MQ=255)
                                                                                                                                   cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaa         >  1:533250/1‑140 (MQ=255)
                                                                                                                                   cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaa         >  1:497636/1‑140 (MQ=255)
                                                                                                                                          cTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGAt  >  2:268115/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                          
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGAT  >  NC_000913/3423392‑3423669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑