New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1050545	NA (NA)	107 (1.220)	4/276	4.6	69.0%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2760086	48 (0.550)					coding (1102/1410 nt)	yfjI	CP4‑57 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

GGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACG  >  NC_000913/2759950‑2760220                                                                                                                                         |                                                                                                                                       ggTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAg                                                                                                                                     >  2:664430/1‑140 (MQ=32)         cAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAagca                                                                                                                             <  1:840481/140‑1 (MQ=39)         cAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAagca                                                                                                                             <  1:840403/140‑1 (MQ=39)           gAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAagcagc                                                                                                                           <  1:466395/140‑1 (MQ=40)             aaTGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGcagcag                                                                                                                         <  1:802551/140‑1 (MQ=255)             aaTGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGcagcag                                                                                                                         <  1:1511815/140‑1 (MQ=255)                 agaATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGga                                                                                                                     >  2:1046385/1‑140 (MQ=255)                 agaATGATTGGCCTTCTTTATGATTTTAAGGATTAAGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGga                                                                                                                     >  2:504542/1‑140 (MQ=255)                 agaATGATTGGCCTTCTTTATGATTTTAAGGATTAAGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGga                                                                                                                     >  2:504822/1‑140 (MQ=255)                     tGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATa                                                                                                                 <  1:1035967/140‑1 (MQ=255)                     tGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATa                                                                                                                 <  1:1504976/140‑1 (MQ=255)                        ttGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAgag                                                                                                              >  2:467490/1‑138 (MQ=255)                             cttcttTATCAATTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTg                                                                                                         >  2:822861/1‑140 (MQ=255)                                  ttATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGATCTTGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTTTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGtata                                                                                                    <  2:919855/140‑1 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               <  1:272738/140‑1 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               <  1:540359/140‑1 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               >  1:712215/1‑140 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               <  2:1303927/140‑1 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               <  2:1303924/140‑1 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               >  1:1226528/1‑140 (MQ=255)                                       aTTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaa                                                                                               <  2:1002341/140‑1 (MQ=255)                                          ttAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaagaa                                                                                            >  2:47941/1‑140 (MQ=255)                                          ttAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTgaagaa                                                                                            >  2:47728/1‑140 (MQ=255)                                                  tATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTAGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGAAAAAGCAGCAGTGGAGAGAGTGGCTTGGTATATTGAAGAATACATCCg                                                                                    >  1:1460782/1‑140 (MQ=255)                                                         cTAAAATGGCGGAGAACATTGCGAGGCTTGCTTCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCAGTTACCGCAGTACAAGCAGCAGTGGAGATAGTGGCTTGGTAAATTTACGAATACATCCGCTTGtac                                                                             >  2:1380331/1‑138 (MQ=21)                                                                          aTGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGtt                                                            <  2:764979/140‑1 (MQ=255)                                                                           tGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGttt                                                           >  1:1299835/1‑140 (MQ=255)                                                                            ggCGAGGCTTGCTGCCTTACTTCATTACATCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTTGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGtttt                                                          >  2:457821/1‑140 (MQ=255)                                                                              cGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGTTAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCt                                                        <  1:1033603/140‑1 (MQ=255)                                                                              cGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCt                                                        <  2:231220/140‑1 (MQ=255)                                                                                 ggCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTa                                                     <  2:942257/140‑1 (MQ=255)                                                                                   cTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGa                                                   >  2:192697/1‑140 (MQ=255)                                                                                    ttGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGAt                                                  <  2:1225231/140‑1 (MQ=255)                                                                                            ttacttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGa                                          >  1:315053/1‑140 (MQ=255)                                                                                             tacttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGaa                                         >  1:510662/1‑140 (MQ=255)                                                                                             tacttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGaa                                         >  1:1018684/1‑140 (MQ=255)                                                                                             tacttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGaa                                         >  1:1018720/1‑140 (MQ=255)                                                                                                  cattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGa                                    >  1:208642/1‑140 (MQ=255)                                                                                                   attacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGAt                                   <  1:1425136/140‑1 (MQ=255)                                                                                                   attacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGAt                                   <  2:282876/140‑1 (MQ=255)                                                                                                     tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGAAGTGTAGATAGTGGCGGGGTATATTGAACAAAACATCCGCTGGTTCTCTAAAAAAGAAGTGTTTTCTTTTGATGTGTCAGAAGCTGAGGa                                 >  2:863640/1‑140 (MQ=37)                                                                                                          caGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCttt                            >  1:534100/1‑140 (MQ=255)                                                                                                                  aTGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTgg                    >  2:16285/1‑140 (MQ=255)                                                                                                                   tGGAGGCGATTTATCTGTTACCGCAGTAACACCAGCAGTCGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGGGCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGa                   <  2:91248/140‑1 (MQ=255)                                                                                                                     gAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATa                 <  2:423301/140‑1 (MQ=255)                                                                                                                       ggCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATaaa               >  1:521300/1‑140 (MQ=255)                                                                                                                                  tGTTACCGCAGTAAAAGCCGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCTCTTGTTCTCTAAAATAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTAGTGATGGATATAATATTACTgat    >  2:1526638/1‑138 (MQ=255)                                                                                                                                    ttACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACg  >  1:1126214/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                       GGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGCAGTAAAAGCAGCAGTGGAGATAGTGGCTTGGTATATTGAAGAATACATCCGCTTGTTCTCTAAAAAAGAAGAGTTTTCTTTAGATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACG  >  NC_000913/2759950‑2760220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.