| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3718305 | 116 (0.900) | 21 (0.180) | 15/182 | 11.2 | 15.9% | intergenic (+21/+29) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein |
| ? | NC_000913 | = 3718325 | 115 (0.970) | intergenic (+41/+9) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3718201‑3718305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagtaaaAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATCA < NC_000913/3718325‑3718227 GCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGA > 1:3173264/1‑100GCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGA > 2:2168218/1‑100 CCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAG < 2:2011026/100‑1 CCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAG < 1:1115684/100‑1 CCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAG < 1:1115967/100‑1 CGCCTGTGCCGTGGATAAGTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGT < 2:2995986/100‑1 CGCCTGTGCCGGGGATAATTTGATTGATGCGTTACAAGGAAAGGGAGGGAAGAACAGTGTGAATCCGCACGTAGCGGACTAAGCCGCGACTGCGTAGAGT < 2:2995891/100‑1 GCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTA < 1:1425765/100‑1 GCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTA < 2:619751/100‑1 ATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGGCCCGAGCGATTATCGGG < 2:2666060/100‑1 TGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCT < 1:2892220/100‑1 GATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTT < 2:1868695/100‑1 ATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTT < 1:23886/100‑1 GCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTAC < 1:1901835/100‑1 GCGTTACAAGGAAAGGTTGAGAAGAACTGTGTCAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTAC < 2:2293168/100‑1 CGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACT > 2:120593/1‑100 GTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTC < 2:371957/100‑1 GTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTC < 2:525021/100‑1 TTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCT < 2:2227051/100‑1 TACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTA < 1:1405161/100‑1 ACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTAC < 2:2153193/100‑1 CAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACG < 1:3018486/100‑1 CAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACG < 1:668473/100‑1 CAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACG < 1:1746328/100‑1 AAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGC < 1:2266855/100‑1 AGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCA < 2:394934/100‑1 AGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCA < 2:394355/100‑1 GGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAG < 1:1287163/100‑1 GGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAG < 1:120593/100‑1 TGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGT‑AAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTT < 1:2934464/100‑1 AGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAA > 1:2327171/1‑100 GAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAAC > 2:1533076/1‑100 GAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAAC > 1:2311679/1‑100 AGTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACG > 1:2151156/1‑100 GTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGC < 2:469927/100‑1 GTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGC > 2:2475450/1‑100 GTAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGC > 1:1906969/1‑100 TAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCA < 2:919865/100‑1 TAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCA < 2:376122/100‑1 TAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCA > 1:1106759/1‑100 TAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCA < 1:2868489/100‑1 TAAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCA > 1:1106869/1‑100 AAAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCAT > 1:3070587/1‑100 AAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATC < 2:2620978/100‑1 AAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATC < 1:247302/100‑1 AAAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATC < 1:247191/100‑1 AAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATCA > 2:2409/1‑100 AAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATCA < 2:1149895/100‑1 GCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3718201‑3718305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagtaaaAGCCCGAGCGATTATCGGGCTTTACTCTACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTCTTCTCAACCTTTCCTTGTAACGCATCA < NC_000913/3718325‑3718227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |