| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 786737 | NA (NA) | 7 (0.010) | 6/270 | NT | NA | noncoding (3/35 nt) | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 786771 | NA (NA) | intergenic (+86/+72) | aroG/gpmA | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1 | |||||
TGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/786585‑786737‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaTTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA < NC_000913/786771‑786623 TGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACC > 1:3667262/1‑150TGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACC < 2:7355618/150‑1 GCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCAC < 2:6960630/150‑1 GCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCAC > 2:5114785/1‑150 GCCTACGGTAAGAGCATCACCGATCCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGACTGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAAGTGGCGGATGCGCCGTCAGAGTGGCGTATCCGATGTATCGCCAC > 2:5114833/1‑150 CCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA > 2:7201964/1‑150 CCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA > 1:5020882/1‑150 CCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA > 1:755895/1‑150 CATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑GGCCTGATGCGACGCTGCGCGACTTATC < 1:5940146/150‑1 ATCGGCTGGGAAGAGACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑GGCCTGATGCGACGCTGCGCGACTTATCA < 2:4259191/150‑1 TCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑GGCCTGATGCGACGCTGCGCGACTTATCAG < 2:4172972/150‑1 AAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGG < 1:5263049/150‑1 AAGATACCGAGGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAAGTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCTCAGTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGG < 1:5263048/150‑1 CGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCA < 2:5531547/150‑1 GATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑GGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATC < 1:3174878/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCTGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTATACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACTTAACAGAGCATCGGTATCTTC < 2:7425272/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC < 2:4030765/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC < 2:3269426/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC < 2:4847806/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC < 1:5083701/150‑1 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC > 1:4998791/1‑150 CACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCACATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTC < 1:4875000/150‑1 ACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCC < 2:4422035/150‑1 ACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCC < 2:4829472/150‑1 CATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCC < 2:4207023/150‑1 CATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCC < 2:5712288/150‑1 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA > 2:1100196/1‑150 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA < 1:5188515/150‑1 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA < 1:5188440/150‑1 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA > 2:7235996/1‑150 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA > 1:108522/1‑150 TGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/786585‑786737‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaTTGCCTGATGCGACGCTGCGCGACTTATCAGGCCTGTGGTGATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACCCGCGACGCGCTTTTACTGCATTCGCCAGTTGACGTAACAGAGCATCGGTATCTTCCCA < NC_000913/786771‑786623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |