| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 287759 = | 53 (0.590) | 5 (0.060) | 5/260 | NT | 7.9% | coding (971/1611 nt) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| ? | NC_000913 | 287824 = | 66 (0.770) | coding (1036/1611 nt) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase | |||||
CGAATTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/287913‑287759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcagACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGGGCAGA > NC_000913/287824‑287969 CGAATTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGG < 2:88473/149‑1CGAATTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGG < 2:959426/149‑1 ATTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTG > 2:814506/1‑149 TTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGC < 1:286669/149‑1 AGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACg > 1:581711/1‑148 TCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCT > 1:596709/1‑149 CTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTC > 1:32561/1‑149 GGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAA‑‑‑CTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTTCGGCTCTAGGGCCACGCCTCGCTCAATTCGACCTTCc > 2:252379/1‑148 CCGCCAGTTGCCCGGAACGGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGG < 2:596709/149‑1 GCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGGG < 2:32561/149‑1 CTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGTGC > 2:63916/1‑149 TGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCCGCACGTCGCCTTCCGGGCc > 2:1528674/1‑148 TGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGGGtt > 1:569550/1‑147 CAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGGGCAGA > 1:1558973/1‑149 CGAATTGAGCGAGTCGTTGCCATAGAGCCGTAAGAAGCCCGGGCGCGCGGTGAGCGAGCCGAGGGTGTCGTCGAACGGAATGCGCAGGGTCTGCAGCTCCGGGTCAAGCGAACTGGCGTCGAAATCGTCCCGCCAGTTGCCCGGAACGGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/287913‑287759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcagACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGCCTTCCGGGCAGA > NC_000913/287824‑287969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |