| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 786739 = | NA (NA) | 5 (0.060) | 4/260 | NT | NA | noncoding (5/35 nt) | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 786770 = | NA (NA) | intergenic (+85/+73) | aroG/gpmA | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1 | |||||
AGATCGCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/786892‑786739‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGC > NC_000913/786770‑786916 AGATCGCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTAT < 2:1270295/149‑1 tATCGCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCTGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATC < 1:341036/148‑1 GATCGCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATC < 2:960451/149‑1 GCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTTCCTGATGCGACGCTGCGCGACTTATCAGGC < 2:1572350/149‑1 GCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGC > 2:6396/1‑149 GCAGCGAAAGCAGCGGCGGTGGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGC < 1:1128993/149‑1 TAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCATTCTCATTTTAAACGAATGCCGTTTACTTCGCTTTCAACAGGTTTGCACCC > 2:283979/1‑149 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTA < 1:1440319/95‑1 ATTGCCTGATGCGACGCTGCGCGACTTATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTA > 2:1440319/1‑95 TTGCCTGATGCGACGCTGCGCGACTTATCAGGCAATGTGCTCCATTGTTAGCATCAAAAAAGCCGACTCACTTGCTGTCGGCTTTCTCATTTTAAACGAAAGAAGTTTACTTCGCTTTACCCAGGGTTTCAACCGCCTCTGCTTTCTCT > 1:255285/1‑149 TTGCCTGATGCGACGCTGCGCGACTTATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCT > 1:856822/1‑149 ATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATA > 1:1142278/1‑149 AGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGCCGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATA > 2:42766/1‑149 AGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATA > 2:1417833/1‑149 GGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAG > 1:641278/1‑149 GGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAG > 2:960564/1‑149 GCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGC < 2:1014030/149‑1 AGATCGCAGCGAAAGCAGCGGCGGTTGCAAACCAGGGTAAAGCGAAGTAAACGTCATTCGTTTAAAATGAGAAAGCCGACTGCAAGTGAGTCGGCTTTTTTGTTGCTAACAATGGAGCACATTGCCTGATGCGACGCTGCGCGACTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/786892‑786739‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATGACGTTTACTTCGCTTTACCCTGGTTTGCAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGC > NC_000913/786770‑786916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |